Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACIQTD_RS11405 Genome accession   NZ_CP173185
Coordinates   2331107..2331376 (-) Length   89 a.a.
NCBI ID   WP_023349160.1    Uniprot ID   A0AB35KDE0
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2326107..2336376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS11365 - 2326643..2327452 (-) 810 WP_014570791.1 metal ABC transporter permease -
  ACIQTD_RS11370 - 2327445..2328182 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  ACIQTD_RS11375 - 2328359..2329201 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  ACIQTD_RS11380 - 2329198..2329635 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  ACIQTD_RS11385 comGG 2329716..2330000 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACIQTD_RS11390 comGF 2330039..2330485 (-) 447 WP_032948129.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACIQTD_RS11395 comGE 2330448..2330744 (-) 297 WP_017865157.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACIQTD_RS11400 comGD 2330716..2331147 (-) 432 WP_026138965.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACIQTD_RS11405 comGC 2331107..2331376 (-) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  ACIQTD_RS11410 comGB 2331503..2332576 (-) 1074 WP_270250711.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACIQTD_RS11415 comGA 2332470..2333408 (-) 939 WP_270250640.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10113.52 Da        Isoelectric Point: 4.2950

>NTDB_id=1070520 ACIQTD_RS11405 WP_023349160.1 2331107..2331376(-) (comGC) [Lactococcus lactis subsp. lactis strain MGEL24009]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide


Download         Length: 270 bp        

>NTDB_id=1070520 ACIQTD_RS11405 WP_023349160.1 2331107..2331376(-) (comGC) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

88

84.27

0.742
  comYC Streptococcus gordonii str. Challis substr. CH1

57.647

95.506

0.551
  comGC/cglC Streptococcus pneumoniae Rx1

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae D39

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae R6

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae TIGR4

55.056

100

0.551
  comYC Streptococcus suis isolate S10

58.904

82.022

0.483
  comGC/cglC Streptococcus mitis SK321

55.263

85.393

0.472
  comYC Streptococcus mutans UA140

52.055

82.022

0.427
  comYC Streptococcus mutans UA159

52.055

82.022

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

57.812

71.91

0.416

Multiple sequence alignment