Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACINK7_RS19010 Genome accession   NZ_CP173170
Coordinates   4375123..4376343 (-) Length   406 a.a.
NCBI ID   WP_404357731.1    Uniprot ID   -
Organism   Methylotuvimicrobium sp. KM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4370123..4381343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK7_RS18980 (ACINK7_18980) - 4371204..4371557 (+) 354 WP_404357722.1 hypothetical protein -
  ACINK7_RS18985 (ACINK7_18985) yacG 4372141..4372347 (-) 207 WP_404357723.1 DNA gyrase inhibitor YacG -
  ACINK7_RS18990 (ACINK7_18990) zapD 4372347..4373117 (-) 771 WP_014147183.1 cell division protein ZapD -
  ACINK7_RS18995 (ACINK7_18995) coaE 4373121..4373726 (-) 606 WP_404357725.1 dephospho-CoA kinase -
  ACINK7_RS19000 (ACINK7_19000) pilD 4373731..4374633 (-) 903 WP_404357727.1 prepilin peptidase Machinery gene
  ACINK7_RS19005 (ACINK7_19005) - 4374658..4374864 (-) 207 WP_404357729.1 hypothetical protein -
  ACINK7_RS19010 (ACINK7_19010) pilC 4375123..4376343 (-) 1221 WP_404357731.1 type II secretion system F family protein Machinery gene
  ACINK7_RS19015 (ACINK7_19015) pilB 4376346..4378064 (-) 1719 WP_404357733.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACINK7_RS19020 (ACINK7_19020) - 4378175..4380985 (-) 2811 WP_404357735.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44950.93 Da        Isoelectric Point: 6.8775

>NTDB_id=1070400 ACINK7_RS19010 WP_404357731.1 4375123..4376343(-) (pilC) [Methylotuvimicrobium sp. KM1]
MSEQVEQIDFIWDGKDKSGKRTKGEIAAKSETIARSELRKMGVRVISVKKKPKPLFGTRVKAITPGDIAIFSRQLATMLE
AGVPLVQSFDIIGRGHENPSMQKMLLDIKADIEGGDTLAEALKRRPIYFDELFCNLVESGEQAGVLETLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFVVTAILLIFVVPVFEELFQGFGADLPAFTKMVINLSEWMQEWWWIMVGSIVAIVYTFN
YFHKRSRPFNHFLDRTLLKIPVVGLILNKSAIARFSRTLSTMSAAGVPLVEALESVAGACGNIIYADAVLKMREDVATGQ
RLQFAMQQTVLFPHMVTQMVAIGEESGSIDTMLSKVADFYEEEVDNLVDNLSSLMEPLIMSVLGVLVGGLIVAMYLPIFK
MGAAVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1070400 ACINK7_RS19010 WP_404357731.1 4375123..4376343(-) (pilC) [Methylotuvimicrobium sp. KM1]
ATGTCTGAACAAGTCGAACAAATTGATTTCATCTGGGATGGCAAAGATAAAAGCGGGAAACGCACCAAGGGGGAAATCGC
CGCGAAATCCGAAACGATTGCGCGGAGCGAATTGCGCAAAATGGGCGTACGCGTCATTAGCGTCAAGAAAAAACCCAAGC
CTTTGTTCGGCACGCGTGTCAAAGCCATTACGCCAGGCGATATCGCTATTTTCAGCCGGCAACTCGCGACGATGCTCGAA
GCGGGGGTGCCGTTGGTGCAATCGTTCGATATCATCGGGAGAGGCCATGAAAACCCGAGCATGCAAAAAATGCTGCTTGA
TATCAAGGCGGATATCGAAGGCGGCGATACTTTGGCCGAAGCGCTGAAAAGAAGACCGATTTATTTCGATGAACTTTTTT
GTAATCTGGTCGAATCGGGCGAGCAGGCTGGGGTGCTTGAGACATTGCTCGATAAAATAGCGACCTATAAAGAAAAAACC
GAATCGCTCAAGAAAAAAATCAAAAAAGCGTTGACCTATCCGATTGCAGTGCTGGTTGTCGCGTTTGTCGTCACCGCCAT
TTTGCTGATTTTCGTTGTGCCGGTGTTCGAGGAGTTGTTTCAGGGCTTCGGAGCCGATCTTCCCGCTTTCACGAAGATGG
TTATCAATCTTTCCGAATGGATGCAGGAATGGTGGTGGATAATGGTCGGTAGTATCGTAGCGATTGTCTATACGTTTAAT
TATTTCCATAAACGCTCAAGACCGTTCAATCATTTTCTTGACCGAACCTTATTGAAAATACCGGTTGTCGGGTTGATCTT
GAATAAATCGGCAATCGCACGCTTCTCCAGAACGTTGTCGACAATGTCCGCTGCCGGCGTTCCGTTAGTCGAAGCGCTGG
AGTCTGTTGCGGGTGCTTGCGGAAACATTATTTATGCCGATGCTGTGTTGAAGATGCGCGAAGATGTCGCGACCGGCCAA
CGCTTACAATTTGCCATGCAGCAAACCGTTTTGTTTCCCCACATGGTCACCCAAATGGTCGCAATCGGTGAGGAATCCGG
TTCGATAGACACGATGCTGAGCAAAGTTGCCGATTTTTACGAAGAAGAGGTCGATAATTTGGTAGACAATCTCAGCAGCT
TGATGGAGCCGTTGATCATGTCGGTACTGGGTGTCTTAGTCGGCGGCTTGATCGTTGCGATGTACCTGCCGATCTTTAAA
ATGGGCGCGGCAGTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

61.307

98.03

0.601
  pilC Acinetobacter baumannii D1279779

58.438

97.783

0.571
  pilC Pseudomonas stutzeri DSM 10701

58.081

97.537

0.567
  pilC Acinetobacter baylyi ADP1

55.919

97.783

0.547
  pilG Neisseria meningitidis 44/76-A

46.269

99.015

0.458
  pilG Neisseria gonorrhoeae MS11

46.02

99.015

0.456
  pilC Vibrio campbellii strain DS40M4

42.105

98.276

0.414
  pilC Vibrio cholerae strain A1552

41.457

98.03

0.406
  pilC Thermus thermophilus HB27

38.191

98.03

0.374

Multiple sequence alignment