Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACF2JY_RS01620 Genome accession   NZ_CP172966
Coordinates   311966..312307 (+) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain cel     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 306966..317307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS01580 (ACF2JY_01580) rapD 307105..308169 (-) 1065 WP_015251038.1 aspartate phosphatase RapD -
  ACF2JY_RS01585 (ACF2JY_01585) fabZ 308361..308786 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACF2JY_RS01590 (ACF2JY_01590) mscL 308859..309254 (+) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  ACF2JY_RS01595 (ACF2JY_01595) ywpD 309301..310137 (-) 837 WP_046381515.1 sensor histidine kinase -
  ACF2JY_RS01600 (ACF2JY_01600) - 310171..310323 (+) 153 Protein_319 prealbumin-like fold domain-containing protein -
  ACF2JY_RS01605 (ACF2JY_01605) - 310407..310781 (+) 375 Protein_320 class A sortase -
  ACF2JY_RS01610 (ACF2JY_01610) ywpF 310921..311331 (-) 411 WP_003227794.1 YwpF-like family protein -
  ACF2JY_RS01615 (ACF2JY_01615) ywpG 311506..311889 (+) 384 WP_014478204.1 DynA interaction protein YwpG -
  ACF2JY_RS01620 (ACF2JY_01620) ssbB 311966..312307 (+) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  ACF2JY_RS01625 (ACF2JY_01625) glcR 312532..313308 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  ACF2JY_RS01630 (ACF2JY_01630) ywpJ 313314..314171 (+) 858 WP_046381382.1 phosphatase YwpJ -
  ACF2JY_RS01635 (ACF2JY_01635) hepAB 314297..317065 (-) 2769 WP_046381381.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=1069676 ACF2JY_RS01620 WP_014478203.1 311966..312307(+) (ssbB) [Bacillus subtilis strain cel]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1069676 ACF2JY_RS01620 WP_014478203.1 311966..312307(+) (ssbB) [Bacillus subtilis strain cel]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCAGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment