Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACFSN5_RS09520 Genome accession   NZ_CP172427
Coordinates   2069614..2070009 (-) Length   131 a.a.
NCBI ID   WP_165212193.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2064614..2075009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS09495 (ACFSN5_09495) - 2064833..2065429 (-) 597 WP_165212201.1 TetR/AcrR family transcriptional regulator -
  ACFSN5_RS09500 (ACFSN5_09500) - 2065599..2066183 (+) 585 WP_346773318.1 hypothetical protein -
  ACFSN5_RS09505 (ACFSN5_09505) - 2066211..2066729 (+) 519 WP_165212199.1 hypothetical protein -
  ACFSN5_RS09510 (ACFSN5_09510) - 2066722..2067744 (+) 1023 WP_165212197.1 hypothetical protein -
  ACFSN5_RS09515 (ACFSN5_09515) - 2067790..2069409 (+) 1620 WP_165212195.1 ABC transporter transmembrane domain-containing protein -
  ACFSN5_RS09520 (ACFSN5_09520) ssbB 2069614..2070009 (-) 396 WP_165212193.1 single-stranded DNA-binding protein Machinery gene
  ACFSN5_RS09525 (ACFSN5_09525) ytpR 2070387..2071013 (-) 627 WP_165212191.1 YtpR family tRNA-binding protein -
  ACFSN5_RS09530 (ACFSN5_09530) - 2071035..2071352 (-) 318 WP_165212189.1 thioredoxin family protein -
  ACFSN5_RS09535 (ACFSN5_09535) - 2071345..2071635 (-) 291 WP_165212187.1 DUF4651 domain-containing protein -
  ACFSN5_RS09540 (ACFSN5_09540) pepA 2071735..2072802 (+) 1068 WP_165329421.1 glutamyl aminopeptidase -
  ACFSN5_RS09545 (ACFSN5_09545) proC 2072865..2073635 (+) 771 WP_165212185.1 pyrroline-5-carboxylate reductase -
  ACFSN5_RS09550 (ACFSN5_09550) - 2074056..2074739 (-) 684 WP_165212183.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14795.77 Da        Isoelectric Point: 7.0172

>NTDB_id=1067691 ACFSN5_RS09520 WP_165212193.1 2069614..2070009(-) (ssbB) [Streptococcus sp. ZJ 1593]
MYNKVILIGRLTATPQMVKTPSDKSVSRVTLAVNRRFKTQDGERQADFVTVVFWGKLAETLVSYAGKGSLVSLDGEIRTR
HYEKDGQTRYVTEVLAQSFQLLESRAQRALRENNGTGDLTDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1067691 ACFSN5_RS09520 WP_165212193.1 2069614..2070009(-) (ssbB) [Streptococcus sp. ZJ 1593]
ATGTATAATAAAGTCATTCTTATCGGCCGTTTGACAGCAACTCCCCAGATGGTTAAAACCCCTTCGGATAAATCCGTCTC
CCGCGTGACTTTAGCTGTCAATCGCCGTTTTAAAACTCAGGATGGTGAACGCCAAGCTGACTTTGTCACTGTCGTTTTCT
GGGGCAAGTTGGCTGAAACACTCGTCTCTTATGCTGGCAAAGGGAGTCTGGTCTCTCTTGATGGTGAGATCAGGACGCGT
CATTATGAAAAGGATGGACAGACTCGCTATGTAACCGAGGTCCTGGCTCAATCCTTCCAGCTGCTGGAAAGCCGTGCCCA
ACGAGCCTTACGTGAAAATAACGGCACCGGCGACCTAACAGACTTAGTCCTCGAAGAGGAAGAACTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

90.84

100

0.908
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

44.828

88.55

0.397
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374

Multiple sequence alignment