Detailed information NTG1067650

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ACFSN5_RS00825
• Genome accession: NZ_CP172427
• Coordinates: 145682..146116 (+)
• Length: 144 a.a.
• NCBI ID: WP_165212383.1
• Uniprot ID: -
• Organism: Streptococcus sp. ZJ 1593
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 140682..151116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFSN5_RS00805 (ACFSN5_00805)	-	142983..143357 (+)	375	WP_165329442.1	DUF1033 family protein	-
ACFSN5_RS00810 (ACFSN5_00810)	comGA/cglA	143491..144438 (+)	948	WP_165212397.1	competence type IV pilus ATPase ComGA	Machinery gene
ACFSN5_RS00815 (ACFSN5_00815)	comYB	144362..145405 (+)	1044	WP_277423768.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACFSN5_RS00820 (ACFSN5_00820)	comYC	145402..145728 (+)	327	WP_165212393.1	competence type IV pilus major pilin ComGC	Machinery gene
ACFSN5_RS00825 (ACFSN5_00825)	comYD	145682..146116 (+)	435	WP_165212383.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACFSN5_RS00830 (ACFSN5_00830)	comYE	146088..146381 (+)	294	WP_165212381.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACFSN5_RS00835 (ACFSN5_00835)	comYF	146365..146802 (+)	438	WP_165212379.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACFSN5_RS00840 (ACFSN5_00840)	comGG	146780..147238 (+)	459	WP_165212377.1	competence type IV pilus minor pilin ComGG	-
ACFSN5_RS00845 (ACFSN5_00845)	comYH	147415..148368 (+)	954	WP_165212375.1	class I SAM-dependent methyltransferase	Machinery gene
ACFSN5_RS00850 (ACFSN5_00850)	-	148431..149627 (+)	1197	WP_165212373.1	acetate kinase	-
ACFSN5_RS00855 (ACFSN5_00855)	-	149812..150714 (+)	903	WP_165212371.1	LysR family transcriptional regulator	-
ACFSN5_RS00860 (ACFSN5_00860)	-	150845..151111 (+)	267	WP_165212369.1	ACT domain-containing protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16125.35 Da
• Isoelectric Point: 9.6950

>NTDB_id=1067650 ACFSN5_RS00825 WP_165212383.1 145682..146116(+) (comYD) [Streptococcus sp. ZJ 1593]
MIITRNIRKIGRFRTRAFTLVESLLVLAITSFLLLAFTGGVQEVFAGVQEKLFFLSFEHLYRDSQKLSNAQQKTLTLNIS
DGQVTNGQESLTIPDTVRPSQSYTIEFSPEGGNSSLEKLTFATEKGSVSYQLYIGSGRYKKTEN

Nucleotide

• Length: 435 bp

>NTDB_id=1067650 ACFSN5_RS00825 WP_165212383.1 145682..146116(+) (comYD) [Streptococcus sp. ZJ 1593]
ATGATTATTACAAGAAACATAAGGAAAATCGGCAGGTTCCGAACTAGAGCCTTTACCCTAGTTGAAAGTCTGTTGGTTTT
GGCTATTACCAGCTTTTTATTGTTAGCCTTTACAGGTGGCGTTCAAGAAGTTTTTGCAGGGGTACAAGAGAAGCTTTTTT
TCCTCTCCTTTGAGCACCTCTATCGGGATAGCCAGAAGCTCAGCAATGCCCAGCAAAAGACCTTGACCTTAAATATTTCA
GATGGTCAAGTGACTAATGGACAGGAAAGTCTGACCATCCCTGACACTGTCAGACCCAGTCAATCTTATACCATAGAGTT
TTCACCAGAGGGTGGCAATTCCTCACTGGAAAAACTGACCTTTGCAACTGAGAAAGGTTCTGTCTCTTATCAACTTTATA
TAGGAAGTGGTCGCTATAAAAAAACGGAAAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (14-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	56.818	91.667	0.521
comYD	Streptococcus mutans UA159	56.818	91.667	0.521
comYD	Streptococcus gordonii str. Challis substr. CH1	48.592	98.611	0.479
comGD/cglD	Streptococcus pneumoniae TIGR4	46.457	88.194	0.41
comGD/cglD	Streptococcus mitis NCTC 12261	44.961	89.583	0.403
comGD/cglD	Streptococcus pneumoniae Rx1	45.238	87.5	0.396
comGD/cglD	Streptococcus pneumoniae D39	45.238	87.5	0.396
comGD/cglD	Streptococcus pneumoniae R6	45.238	87.5	0.396
comGD/cglD	Streptococcus mitis SK321	45.238	87.5	0.396