Detailed information NTG1067652

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: ACFSN5_RS00835
• Genome accession: NZ_CP172427
• Coordinates: 146365..146802 (+)
• Length: 145 a.a.
• NCBI ID: WP_165212379.1
• Uniprot ID: -
• Organism: Streptococcus sp. ZJ 1593
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 141365..151802

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFSN5_RS00805 (ACFSN5_00805)	-	142983..143357 (+)	375	WP_165329442.1	DUF1033 family protein	-
ACFSN5_RS00810 (ACFSN5_00810)	comGA/cglA	143491..144438 (+)	948	WP_165212397.1	competence type IV pilus ATPase ComGA	Machinery gene
ACFSN5_RS00815 (ACFSN5_00815)	comYB	144362..145405 (+)	1044	WP_277423768.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACFSN5_RS00820 (ACFSN5_00820)	comYC	145402..145728 (+)	327	WP_165212393.1	competence type IV pilus major pilin ComGC	Machinery gene
ACFSN5_RS00825 (ACFSN5_00825)	comYD	145682..146116 (+)	435	WP_165212383.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACFSN5_RS00830 (ACFSN5_00830)	comYE	146088..146381 (+)	294	WP_165212381.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACFSN5_RS00835 (ACFSN5_00835)	comYF	146365..146802 (+)	438	WP_165212379.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACFSN5_RS00840 (ACFSN5_00840)	comGG	146780..147238 (+)	459	WP_165212377.1	competence type IV pilus minor pilin ComGG	-
ACFSN5_RS00845 (ACFSN5_00845)	comYH	147415..148368 (+)	954	WP_165212375.1	class I SAM-dependent methyltransferase	Machinery gene
ACFSN5_RS00850 (ACFSN5_00850)	-	148431..149627 (+)	1197	WP_165212373.1	acetate kinase	-
ACFSN5_RS00855 (ACFSN5_00855)	-	149812..150714 (+)	903	WP_165212371.1	LysR family transcriptional regulator	-
ACFSN5_RS00860 (ACFSN5_00860)	-	150845..151111 (+)	267	WP_165212369.1	ACT domain-containing protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16229.59 Da
• Isoelectric Point: 5.8737

>NTDB_id=1067652 ACFSN5_RS00835 WP_165212379.1 146365..146802(+) (comYF) [Streptococcus sp. ZJ 1593]
MCPKTRIRAFTLLECLVALLVIAGSVMVYQGLTQVLVTNVAYISKNDEEDWLLFCQQLRSELAGTELEQVADNKLYVKKG
GQPLAFGQSRSDDFRKTNADGRGYQPMLFHVKASTISQDGQTITVFVTFESGLERTFVYDFAKTS

Nucleotide

• Length: 438 bp

>NTDB_id=1067652 ACFSN5_RS00835 WP_165212379.1 146365..146802(+) (comYF) [Streptococcus sp. ZJ 1593]
ATGTGTCCAAAAACTAGAATTCGGGCTTTCACCCTCTTGGAGTGTTTGGTGGCTCTCTTGGTTATTGCGGGCAGTGTCAT
GGTTTATCAAGGTCTGACTCAAGTTTTGGTAACCAATGTCGCTTATATCAGTAAGAATGACGAGGAGGACTGGCTTCTTT
TTTGCCAGCAATTGCGCTCGGAGTTAGCTGGAACAGAGTTGGAACAGGTGGCGGATAATAAACTTTACGTAAAAAAAGGA
GGTCAACCTTTAGCCTTTGGGCAGTCCCGCTCGGATGATTTTCGCAAGACCAATGCGGATGGGCGCGGCTATCAGCCCAT
GCTCTTTCATGTCAAAGCTAGCACTATCAGTCAGGATGGTCAGACCATCACAGTTTTTGTCACCTTTGAATCAGGCTTAG
AAAGGACTTTTGTCTATGATTTTGCAAAAACGTCTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (44-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	63.043	95.172	0.6
comYF	Streptococcus mutans UA159	62.319	95.172	0.593
comGF	Lactococcus lactis subsp. cremoris KW2	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.172	0.434
comGF/cglF	Streptococcus mitis NCTC 12261	42.361	99.31	0.421
comGF/cglF	Streptococcus mitis SK321	40.972	99.31	0.407