Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACHGMI_RS21325 Genome accession   NZ_CP172417
Coordinates   3929554..3929895 (-) Length   113 a.a.
NCBI ID   WP_017696582.1    Uniprot ID   A0AAX3RQL5
Organism   Bacillus subtilis strain AKPS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3924554..3934895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS21310 hepAB 3924796..3927564 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  ACHGMI_RS21315 ywpJ 3927690..3928547 (-) 858 WP_017696583.1 phosphatase YwpJ -
  ACHGMI_RS21320 glcR 3928553..3929329 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ACHGMI_RS21325 ssbB 3929554..3929895 (-) 342 WP_017696582.1 single-stranded DNA-binding protein SsbB Machinery gene
  ACHGMI_RS21330 ywpG 3929972..3930355 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  ACHGMI_RS21335 ywpF 3930530..3930940 (+) 411 WP_003227794.1 YwpF-like family protein -
  ACHGMI_RS21340 - 3931053..3931444 (-) 392 Protein_4147 class A sortase -
  ACHGMI_RS21345 - 3931518..3931670 (-) 153 Protein_4148 prealbumin-like fold domain-containing protein -
  ACHGMI_RS21350 ywpD 3931704..3932540 (+) 837 WP_026113665.1 sensor histidine kinase -
  ACHGMI_RS21355 mscL 3932587..3932982 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  ACHGMI_RS21360 fabZ 3933055..3933480 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACHGMI_RS21365 rapD 3933672..3934736 (+) 1065 WP_017696040.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12461.12 Da        Isoelectric Point: 8.4694

>NTDB_id=1067621 ACHGMI_RS21325 WP_017696582.1 3929554..3929895(-) (ssbB) [Bacillus subtilis strain AKPS2]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTQVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1067621 ACHGMI_RS21325 WP_017696582.1 3929554..3929895(-) (ssbB) [Bacillus subtilis strain AKPS2]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACACAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

93.805

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.34

93.805

0.416
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae D39

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae R6

43.396

93.805

0.407
  ssbB/cilA Streptococcus mitis SK321

43.396

93.805

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381

Multiple sequence alignment