Detailed information NTG1066089

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACF8YQ_RS12040
• Genome accession: NZ_CP172297
• Coordinates: 2602064..2603281 (+)
• Length: 405 a.a.
• NCBI ID: WP_396621538.1
• Uniprot ID: -
• Organism: Marinobacter sp. W-8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2597064..2608281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8YQ_RS12025	-	2597468..2599435 (-)	1968	WP_396621535.1	tetratricopeptide repeat protein	-
ACF8YQ_RS12030	pilE	2599504..2599974 (-)	471	WP_396621536.1	pilin	Machinery gene
ACF8YQ_RS12035	pilB	2600343..2602061 (+)	1719	WP_396621537.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACF8YQ_RS12040	pilC	2602064..2603281 (+)	1218	WP_396621538.1	type II secretion system F family protein	Machinery gene
ACF8YQ_RS12045	pilD	2603363..2604238 (+)	876	WP_396621539.1	prepilin peptidase	Machinery gene
ACF8YQ_RS12050	coaE	2604239..2604856 (+)	618	WP_396621540.1	dephospho-CoA kinase	-
ACF8YQ_RS12055	-	2604945..2605934 (+)	990	WP_396621541.1	hypothetical protein	-
ACF8YQ_RS12060	tsaA	2605943..2606692 (+)	750	WP_011786131.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44348.25 Da
• Isoelectric Point: 9.5726

>NTDB_id=1066089 ACF8YQ_RS12040 WP_396621538.1 2602064..2603281(+) (pilC) [Marinobacter sp. W-8]
MAEKAQKLEAYVWEGKDRKGNKAKGELAGSNIALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMTIRNDISSGTGFASSLRKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLIKVVPQFESLFQGFGADLPVFTQFIIRISEWLQSWWFIVLLGIVGTIFLFK
ESKRRSQKFSDFVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMNIKNDVSSGT
QLQASMRQQGVFPVMAVQLTAIGEESGNLDDMLSKVAEHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLIVGMYLPIFQ
MGQVV

Nucleotide

• Length: 1218 bp

>NTDB_id=1066089 ACF8YQ_RS12040 WP_396621538.1 2602064..2603281(+) (pilC) [Marinobacter sp. W-8]
ATGGCAGAAAAAGCGCAGAAGCTCGAAGCATACGTTTGGGAAGGCAAAGACCGCAAAGGTAATAAAGCCAAAGGGGAGCT
TGCGGGCTCCAATATCGCCTTGGTAAAAGCCCAGTTGCGCAAACAGGGCATCATTCCGGATAAGGTTAAGAAAAAGCCAA
AGCCACTGTTTGGCGGCAGCAAGAAGATTACGCCTTTCGACATTGCAATGCTCACCCGCCAGCTGGCAACAATGATGAAA
GCCGGCGTTCCGCTGGTTCAGAGCTTCGATATCGTGGCCGATGGCCTCGAAAATAAAGGCTTACAGGAACTGGTGATGAC
TATCCGGAACGATATTTCCTCCGGTACCGGTTTCGCATCTTCTCTACGCAAGCATCCTAAATATTTTGATGATCTTTATT
GCAACCTGGTGGACTCAGGTGAGAAAGCCGGTGCGTTGGAACAAATGCTGGATCGTATCGCGACTTACCTTGAGAAAACG
GAGATCCTGAAGAAAAAAGTCAAAAAGGCCATGACTTACCCAATTGCGGTTATCGTTGTCGCAATTGTCGTTACGGCTAT
TCTCTTGATAAAAGTCGTTCCTCAGTTTGAGAGCTTGTTCCAGGGCTTTGGGGCGGATCTACCTGTATTCACACAGTTCA
TTATTCGAATATCCGAATGGCTTCAGTCCTGGTGGTTTATTGTTTTGCTTGGAATCGTCGGTACGATTTTTCTTTTCAAA
GAATCGAAGCGAAGATCCCAGAAATTTTCGGATTTCGTCGATAAATATGTATTGAAGTTGCCGATTGTCGGAGAAATCCT
GGACAAATCTGCTGTCGCTAAATTCGGCCGTGTACTCTCTACCACGTTCGCGGCGGGCGTCCCGCTCGTTGACGCGCTCG
ATTCGGTTGCTGGCGCAACCGGCAACGCCGTGTATCGGGACGCTGTGATGAACATTAAAAACGATGTCTCAAGCGGTACC
CAACTGCAAGCCTCTATGCGGCAACAGGGCGTCTTCCCTGTGATGGCAGTTCAATTGACTGCCATCGGCGAAGAGTCGGG
CAATCTGGACGATATGCTGTCAAAAGTGGCCGAGCATTACGAAGGTGTCGTCGACGATATGGTTGATAACCTCACAGCCC
TGATGGAGCCCATGATTATGGCCGTACTCGGCGTACTGGTTGGCGGCCTGATCGTTGGCATGTACCTTCCAATCTTCCAG
ATGGGTCAGGTTGTCTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (277-397)

• Type II secretion system (T2SS), protein F (T2SSF) (72-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	66.42	100	0.664
pilC	Acinetobacter baumannii D1279779	58.025	100	0.58
pilC	Acinetobacter baylyi ADP1	57.389	100	0.575
pilC	Legionella pneumophila strain ERS1305867	53.695	100	0.538
pilG	Neisseria gonorrhoeae MS11	43.457	100	0.435
pilG	Neisseria meningitidis 44/76-A	43.21	100	0.432
pilC	Vibrio cholerae strain A1552	39.259	100	0.393
pilC	Vibrio campbellii strain DS40M4	38.916	100	0.39
pilC	Thermus thermophilus HB27	36.842	98.519	0.363