Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHZK0_RS10530 Genome accession   NZ_CP172246
Coordinates   2056960..2057298 (+) Length   112 a.a.
NCBI ID   WP_395761514.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2051960..2062298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS10505 (ACHZK0_10505) - 2051960..2052835 (-) 876 WP_395761513.1 hypothetical protein -
  ACHZK0_RS10510 (ACHZK0_10510) - 2052945..2053592 (+) 648 WP_071723983.1 HD domain-containing protein -
  ACHZK0_RS10515 (ACHZK0_10515) - 2053589..2055484 (+) 1896 WP_061679547.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACHZK0_RS10520 (ACHZK0_10520) - 2055560..2056291 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family membrane protein -
  ACHZK0_RS10525 (ACHZK0_10525) - 2056397..2056651 (+) 255 WP_270341203.1 DUF4318 domain-containing protein -
  ACHZK0_RS10530 (ACHZK0_10530) ssb 2056960..2057298 (+) 339 WP_395761514.1 single-stranded DNA-binding protein Machinery gene
  ACHZK0_RS10535 (ACHZK0_10535) - 2057454..2058581 (+) 1128 WP_262741681.1 conserved virulence factor C family protein -
  ACHZK0_RS10540 (ACHZK0_10540) - 2058585..2058968 (+) 384 WP_073518519.1 thiol-disulfide oxidoreductase DCC family protein -
  ACHZK0_RS10545 (ACHZK0_10545) - 2059052..2059486 (+) 435 WP_098885140.1 BrxA/BrxB family bacilliredoxin -
  ACHZK0_RS10550 (ACHZK0_10550) - 2059536..2060312 (+) 777 WP_395761515.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12907.77 Da        Isoelectric Point: 9.0926

>NTDB_id=1065899 ACHZK0_RS10530 WP_395761514.1 2056960..2057298(+) (ssb) [Bacillus sp. 3G2]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVAITGRIHTR
NYEDDQGKRLYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1065899 ACHZK0_RS10530 WP_395761514.1 2056960..2057298(+) (ssb) [Bacillus sp. 3G2]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACGAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCTTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGTGGACTTTATTAATTGTGTCGTTT
GGAGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAAGGGTCTCTTGTTGCAATTACTGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGACTATATATAACGGAAGTGGTGATTGAGAGTATTACATTTTTGGAGAGAAGGCG
GGAGGGGGCATCACAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.101

100

0.554
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.455

98.214

0.446
  ssbB Lactococcus lactis subsp. cremoris KW2

47.619

93.75

0.446
  ssbA Streptococcus mutans UA159

43.636

98.214

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411

Multiple sequence alignment