Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACHFJ9_RS12700 | Genome accession | NZ_CP171887 |
| Coordinates | 996826..997110 (+) | Length | 94 a.a. |
| NCBI ID | WP_054867875.1 | Uniprot ID | - |
| Organism | Vibrio sp. D3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 991826..1002110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHFJ9_RS12690 (ACHFJ9_12690) | - | 994237..994509 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| ACHFJ9_RS12695 (ACHFJ9_12695) | ppiD | 994711..996570 (+) | 1860 | WP_256954371.1 | peptidylprolyl isomerase | - |
| ACHFJ9_RS12700 (ACHFJ9_12700) | comEA | 996826..997110 (+) | 285 | WP_054867875.1 | ComEA family DNA-binding protein | Machinery gene |
| ACHFJ9_RS12705 (ACHFJ9_12705) | rrtA | 997209..997760 (-) | 552 | WP_005390532.1 | rhombosortase | - |
| ACHFJ9_RS12710 (ACHFJ9_12710) | - | 997764..998378 (+) | 615 | WP_114322553.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACHFJ9_RS12715 (ACHFJ9_12715) | - | 998385..999707 (-) | 1323 | WP_164666890.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACHFJ9_RS12720 (ACHFJ9_12720) | yfbR | 999723..1000307 (-) | 585 | WP_258684045.1 | 5'-deoxynucleotidase | - |
| ACHFJ9_RS12725 (ACHFJ9_12725) | - | 1000398..1001612 (-) | 1215 | WP_395357012.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10264.90 Da Isoelectric Point: 5.8499
>NTDB_id=1064640 ACHFJ9_RS12700 WP_054867875.1 996826..997110(+) (comEA) [Vibrio sp. D3]
MKWILTLCLFVFAPFSMAADSATGKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATGKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1064640 ACHFJ9_RS12700 WP_054867875.1 996826..997110(+) (comEA) [Vibrio sp. D3]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGGCAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACAGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGGCAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACAGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
73.684 |
100 |
0.745 |
| comEA | Vibrio cholerae strain A1552 |
61.957 |
97.872 |
0.606 |
| comEA | Vibrio cholerae C6706 |
61.957 |
97.872 |
0.606 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.383 |
86.17 |
0.426 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.065 |
65.957 |
0.383 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
39.326 |
94.681 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
43.038 |
84.043 |
0.362 |