Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PN837_RS04180 | Genome accession | NZ_CP171822 |
| Coordinates | 1046843..1047097 (+) | Length | 84 a.a. |
| NCBI ID | WP_395376650.1 | Uniprot ID | - |
| Organism | Marinicella sp. W31 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1041843..1052097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PN837_RS04165 (PN837_004165) | - | 1042536..1044065 (-) | 1530 | WP_395376644.1 | hypothetical protein | - |
| PN837_RS04170 (PN837_004170) | - | 1044079..1044687 (-) | 609 | WP_395376645.1 | hypothetical protein | - |
| PN837_RS04175 (PN837_004175) | - | 1044687..1046549 (-) | 1863 | WP_395376647.1 | hypothetical protein | - |
| PN837_RS04180 (PN837_004180) | comEA | 1046843..1047097 (+) | 255 | WP_395376650.1 | ComEA family DNA-binding protein | Machinery gene |
| PN837_RS04185 (PN837_004185) | - | 1047149..1047544 (-) | 396 | WP_395376653.1 | YhcB family protein | - |
| PN837_RS04190 (PN837_004190) | - | 1047675..1047977 (-) | 303 | WP_395376654.1 | DUF2288 family protein | - |
| PN837_RS04195 (PN837_004195) | - | 1047983..1050847 (-) | 2865 | WP_395376655.1 | insulinase family protein | - |
| PN837_RS04200 (PN837_004200) | - | 1050860..1051702 (-) | 843 | WP_395376658.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 84 a.a. Molecular weight: 9144.72 Da Isoelectric Point: 8.5619
>NTDB_id=1064421 PN837_RS04180 WP_395376650.1 1046843..1047097(+) (comEA) [Marinicella sp. W31]
MKTIKAILITLSLFINAAIAAVNVNSADAETIAKELKGIGMTKAQAIVEYREANGQFQTVEQLTEVKGIGLKTVEKNREE
ILLK
MKTIKAILITLSLFINAAIAAVNVNSADAETIAKELKGIGMTKAQAIVEYREANGQFQTVEQLTEVKGIGLKTVEKNREE
ILLK
Nucleotide
Download Length: 255 bp
>NTDB_id=1064421 PN837_RS04180 WP_395376650.1 1046843..1047097(+) (comEA) [Marinicella sp. W31]
ATGAAAACCATAAAAGCAATTTTGATCACATTAAGCCTGTTCATCAATGCAGCCATTGCCGCAGTTAACGTCAACAGTGC
CGACGCTGAAACCATAGCCAAAGAACTGAAAGGTATTGGCATGACTAAAGCTCAGGCCATTGTTGAATACAGAGAAGCTA
ACGGCCAGTTTCAAACGGTTGAGCAATTGACGGAAGTGAAAGGCATTGGTTTGAAAACGGTTGAGAAAAACCGTGAAGAA
ATTCTATTGAAATAA
ATGAAAACCATAAAAGCAATTTTGATCACATTAAGCCTGTTCATCAATGCAGCCATTGCCGCAGTTAACGTCAACAGTGC
CGACGCTGAAACCATAGCCAAAGAACTGAAAGGTATTGGCATGACTAAAGCTCAGGCCATTGTTGAATACAGAGAAGCTA
ACGGCCAGTTTCAAACGGTTGAGCAATTGACGGAAGTGAAAGGCATTGGTTTGAAAACGGTTGAGAAAAACCGTGAAGAA
ATTCTATTGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae strain A1552 |
53.409 |
100 |
0.56 |
| comEA | Vibrio cholerae C6706 |
53.409 |
100 |
0.56 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.571 |
83.333 |
0.488 |
| comEA | Vibrio campbellii strain DS40M4 |
61.29 |
73.81 |
0.452 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
58.065 |
73.81 |
0.429 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
42.683 |
97.619 |
0.417 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
54.839 |
73.81 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
39.506 |
96.429 |
0.381 |
| comE | Neisseria gonorrhoeae MS11 |
39.506 |
96.429 |
0.381 |
| comE | Neisseria gonorrhoeae MS11 |
39.506 |
96.429 |
0.381 |
| comE | Neisseria gonorrhoeae MS11 |
39.506 |
96.429 |
0.381 |
| comEA | Acinetobacter baylyi ADP1 |
51.667 |
71.429 |
0.369 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
47.692 |
77.381 |
0.369 |