Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACHD8M_RS18145 Genome accession   NZ_CP171807
Coordinates   3606407..3606748 (-) Length   113 a.a.
NCBI ID   WP_045926379.1    Uniprot ID   A0AAE2NWI9
Organism   Bacillus velezensis strain BRI3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3601407..3611748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS18130 - 3601674..3604448 (+) 2775 WP_159353526.1 DEAD/DEAH box helicase -
  ACHD8M_RS18135 - 3604561..3605418 (-) 858 WP_159353527.1 Cof-type HAD-IIB family hydrolase -
  ACHD8M_RS18140 - 3605415..3606197 (-) 783 WP_016937688.1 DeoR/GlpR family DNA-binding transcription regulator -
  ACHD8M_RS18145 ssbB 3606407..3606748 (-) 342 WP_045926379.1 single-stranded DNA-binding protein Machinery gene
  ACHD8M_RS18150 - 3606846..3607199 (-) 354 WP_060964082.1 hypothetical protein -
  ACHD8M_RS18155 - 3607372..3607782 (+) 411 WP_016937685.1 YwpF-like family protein -
  ACHD8M_RS18160 mscL 3607828..3608223 (-) 396 WP_049627557.1 large conductance mechanosensitive channel protein MscL -
  ACHD8M_RS18165 fabZ 3608280..3608705 (-) 426 WP_014419074.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACHD8M_RS18170 - 3608901..3609965 (+) 1065 WP_159353528.1 tetratricopeptide repeat protein -
  ACHD8M_RS18175 - 3609983..3610804 (-) 822 WP_014419076.1 flagellar hook-basal body protein -
  ACHD8M_RS18180 - 3610829..3611626 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12563.41 Da        Isoelectric Point: 9.5812

>NTDB_id=1064370 ACHD8M_RS18145 WP_045926379.1 3606407..3606748(-) (ssbB) [Bacillus velezensis strain BRI3]
MFNHVMLVGRLTKDPELRFTSAGIAVAHITLAVSRNFKSASGETGTDFVNCTIWRKSAENTALYCQKGSLVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1064370 ACHD8M_RS18145 WP_045926379.1 3606407..3606748(-) (ssbB) [Bacillus velezensis strain BRI3]
TTGTTTAACCACGTGATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTGCCGTGGC
TCATATTACCTTGGCTGTCAGCCGCAATTTTAAAAGCGCGTCAGGTGAAACCGGGACTGACTTTGTCAACTGCACCATTT
GGAGAAAAAGCGCTGAAAACACAGCATTGTACTGCCAAAAAGGGTCATTGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACTGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

77.876

100

0.779
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

93.805

0.549
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

93.805

0.513
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

39.048

92.92

0.363

Multiple sequence alignment