Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACFMSI_RS07670 | Genome accession | NZ_CP170579 |
| Coordinates | 1565973..1566284 (+) | Length | 103 a.a. |
| NCBI ID | WP_000472256.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain JB2E56 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1560973..1571284
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFMSI_RS07640 (ACFMSI_07640) | - | 1561756..1561959 (+) | 204 | WP_000087559.1 | YqgQ family protein | - |
| ACFMSI_RS07645 (ACFMSI_07645) | - | 1561956..1562942 (+) | 987 | WP_000161315.1 | ROK family glucokinase | - |
| ACFMSI_RS07650 (ACFMSI_07650) | - | 1562942..1563271 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| ACFMSI_RS07655 (ACFMSI_07655) | - | 1563268..1563891 (+) | 624 | WP_113587809.1 | MBL fold metallo-hydrolase | - |
| ACFMSI_RS07660 (ACFMSI_07660) | comGA | 1563943..1564917 (+) | 975 | WP_000697220.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFMSI_RS07665 (ACFMSI_07665) | comGB | 1564889..1565959 (+) | 1071 | WP_000776425.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFMSI_RS07670 (ACFMSI_07670) | comGC | 1565973..1566284 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFMSI_RS07675 (ACFMSI_07675) | comGD | 1566262..1566708 (+) | 447 | WP_001796473.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACFMSI_RS07680 (ACFMSI_07680) | comGE | 1566695..1566994 (+) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| ACFMSI_RS07685 (ACFMSI_07685) | - | 1566912..1567337 (+) | 426 | Protein_1480 | competence type IV pilus minor pilin ComGF | - |
| ACFMSI_RS07690 (ACFMSI_07690) | - | 1567433..1568605 (+) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| ACFMSI_RS07695 (ACFMSI_07695) | - | 1568655..1568741 (+) | 87 | Protein_1482 | type IV pilus minor pilin ComGF family protein | - |
| ACFMSI_RS07700 (ACFMSI_07700) | - | 1568838..1568984 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| ACFMSI_RS07705 (ACFMSI_07705) | - | 1568974..1569498 (+) | 525 | WP_001015120.1 | shikimate kinase | - |
| ACFMSI_RS07710 (ACFMSI_07710) | gcvT | 1569657..1570748 (+) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11315.36 Da Isoelectric Point: 8.5268
>NTDB_id=1058133 ACFMSI_RS07670 WP_000472256.1 1565973..1566284(+) (comGC) [Staphylococcus aureus strain JB2E56]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=1058133 ACFMSI_RS07670 WP_000472256.1 1565973..1566284(+) (comGC) [Staphylococcus aureus strain JB2E56]
ATGTTTAAATTTCTAAAAAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTATTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTAAAAAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTATTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
100 |
100 |
1 |
| comGC | Staphylococcus aureus N315 |
100 |
100 |
1 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
51.163 |
83.495 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.163 |
83.495 |
0.427 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |