Detailed information NTG1058134

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACFMSI_RS07675
• Genome accession: NZ_CP170579
• Coordinates: 1566262..1566708 (+)
• Length: 148 a.a.
• NCBI ID: WP_001796473.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain JB2E56
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1567433..1568605	1566262..1566708	flank	725

Gene organization within MGE regions

Location: 1566262..1568605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFMSI_RS07675 (ACFMSI_07675)	comGD	1566262..1566708 (+)	447	WP_001796473.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACFMSI_RS07680 (ACFMSI_07680)	comGE	1566695..1566994 (+)	300	WP_000844413.1	hypothetical protein	Machinery gene
ACFMSI_RS07685 (ACFMSI_07685)	-	1566912..1567337 (+)	426	Protein_1480	competence type IV pilus minor pilin ComGF	-
ACFMSI_RS07690 (ACFMSI_07690)	-	1567433..1568605 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17131.31 Da
• Isoelectric Point: 10.3312

>NTDB_id=1058134 ACFMSI_RS07675 WP_001796473.1 1566262..1566708(+) (comGD) [Staphylococcus aureus strain JB2E56]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1058134 ACFMSI_RS07675 WP_001796473.1 1566262..1566708(+) (comGD) [Staphylococcus aureus strain JB2E56]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993