Detailed information NTG1056042

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: ACFDBA_RS06275
• Genome accession: NZ_CP170250
• Coordinates: 1290676..1290993 (+)
• Length: 105 a.a.
• NCBI ID: WP_002446532.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain PS21
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1285676..1295993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFDBA_RS06245 (ACFDBA_06240)	-	1286453..1286653 (+)	201	WP_002446537.1	YqgQ family protein	-
ACFDBA_RS06250 (ACFDBA_06245)	-	1286653..1287639 (+)	987	WP_002446536.1	ROK family glucokinase	-
ACFDBA_RS06255 (ACFDBA_06250)	-	1287639..1287965 (+)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
ACFDBA_RS06260 (ACFDBA_06255)	-	1287965..1288588 (+)	624	WP_002487003.1	MBL fold metallo-hydrolase	-
ACFDBA_RS06265 (ACFDBA_06260)	comGA	1288645..1289619 (+)	975	WP_002446534.1	competence type IV pilus ATPase ComGA	Machinery gene
ACFDBA_RS06270 (ACFDBA_06265)	comGB	1289591..1290658 (+)	1068	WP_046044252.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACFDBA_RS06275 (ACFDBA_06270)	comGC	1290676..1290993 (+)	318	WP_002446532.1	competence type IV pilus major pilin ComGC	Machinery gene
ACFDBA_RS06280 (ACFDBA_06275)	comGD	1290983..1291420 (+)	438	WP_381413456.1	competence type IV pilus minor pilin ComGD	-
ACFDBA_RS06285 (ACFDBA_06280)	-	1291407..1291700 (+)	294	WP_020367648.1	hypothetical protein	-
ACFDBA_RS06290 (ACFDBA_06285)	-	1291624..1292115 (+)	492	WP_381413458.1	competence type IV pilus minor pilin ComGF	-
ACFDBA_RS06295 (ACFDBA_06290)	-	1292280..1292792 (+)	513	WP_046044250.1	shikimate kinase	-
ACFDBA_RS06300 (ACFDBA_06295)	gcvT	1293010..1294101 (+)	1092	WP_002457722.1	glycine cleavage system aminomethyltransferase GcvT	-
ACFDBA_RS06305 (ACFDBA_06300)	gcvPA	1294121..1295467 (+)	1347	WP_381413460.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11491.53 Da
• Isoelectric Point: 9.2160

>NTDB_id=1056042 ACFDBA_RS06275 WP_002446532.1 1290676..1290993(+) (comGC) [Staphylococcus epidermidis strain PS21]
MKTLKLLKQTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN

Nucleotide

• Length: 318 bp

>NTDB_id=1056042 ACFDBA_RS06275 WP_002446532.1 1290676..1290993(+) (comGC) [Staphylococcus epidermidis strain PS21]
ATGAAAACATTGAAATTATTGAAACAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATCAGTTT
ATTATTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAACCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAGGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (9-32)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus MW2	86.275	97.143	0.838
comGC	Staphylococcus aureus N315	86.275	97.143	0.838
comGC/cglC	Streptococcus mitis SK321	43.689	98.095	0.429
comGC/cglC	Streptococcus pneumoniae R6	43.617	89.524	0.39
comGC/cglC	Streptococcus pneumoniae TIGR4	43.617	89.524	0.39
comGC/cglC	Streptococcus pneumoniae Rx1	43.617	89.524	0.39
comGC/cglC	Streptococcus pneumoniae D39	43.617	89.524	0.39
comYC	Streptococcus mutans UA159	47.674	81.905	0.39
comYC	Streptococcus suis isolate S10	47.674	81.905	0.39
comYC	Streptococcus mutans UA140	47.674	81.905	0.39
comYC	Streptococcus gordonii str. Challis substr. CH1	46.512	81.905	0.381
comGC/cglC	Streptococcus mitis NCTC 12261	50	72.381	0.362
comGC	Bacillus subtilis subsp. subtilis str. 168	41.758	86.667	0.362
comGC	Lactococcus lactis subsp. cremoris KW2	46.341	78.095	0.362