Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACFDBA_RS06270 | Genome accession | NZ_CP170250 |
| Coordinates | 1289591..1290658 (+) | Length | 355 a.a. |
| NCBI ID | WP_046044252.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain PS21 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1284591..1295658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDBA_RS06240 (ACFDBA_06235) | - | 1285009..1286469 (+) | 1461 | WP_049386295.1 | rhomboid family intramembrane serine protease | - |
| ACFDBA_RS06245 (ACFDBA_06240) | - | 1286453..1286653 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| ACFDBA_RS06250 (ACFDBA_06245) | - | 1286653..1287639 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| ACFDBA_RS06255 (ACFDBA_06250) | - | 1287639..1287965 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACFDBA_RS06260 (ACFDBA_06255) | - | 1287965..1288588 (+) | 624 | WP_002487003.1 | MBL fold metallo-hydrolase | - |
| ACFDBA_RS06265 (ACFDBA_06260) | comGA | 1288645..1289619 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDBA_RS06270 (ACFDBA_06265) | comGB | 1289591..1290658 (+) | 1068 | WP_046044252.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFDBA_RS06275 (ACFDBA_06270) | comGC | 1290676..1290993 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFDBA_RS06280 (ACFDBA_06275) | comGD | 1290983..1291420 (+) | 438 | WP_381413456.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDBA_RS06285 (ACFDBA_06280) | - | 1291407..1291700 (+) | 294 | WP_020367648.1 | hypothetical protein | - |
| ACFDBA_RS06290 (ACFDBA_06285) | - | 1291624..1292115 (+) | 492 | WP_381413458.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDBA_RS06295 (ACFDBA_06290) | - | 1292280..1292792 (+) | 513 | WP_046044250.1 | shikimate kinase | - |
| ACFDBA_RS06300 (ACFDBA_06295) | gcvT | 1293010..1294101 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFDBA_RS06305 (ACFDBA_06300) | gcvPA | 1294121..1295467 (+) | 1347 | WP_381413460.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42293.55 Da Isoelectric Point: 10.0471
>NTDB_id=1056041 ACFDBA_RS06270 WP_046044252.1 1289591..1290658(+) (comGB) [Staphylococcus epidermidis strain PS21]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=1056041 ACFDBA_RS06270 WP_046044252.1 1289591..1290658(+) (comGB) [Staphylococcus epidermidis strain PS21]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATTTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAACCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATTTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAACCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |