Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDHU_RS11995 Genome accession   NZ_CP170225
Coordinates   2428065..2428571 (+) Length   168 a.a.
NCBI ID   WP_037565084.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC373     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2423065..2433571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHU_RS11965 (ACFDHU_11965) - 2423083..2423913 (+) 831 WP_039647339.1 ParB/RepB/Spo0J family partition protein -
  ACFDHU_RS11970 (ACFDHU_11970) - 2423937..2424827 (+) 891 WP_039647336.1 mechanosensitive ion channel family protein -
  ACFDHU_RS11975 (ACFDHU_11975) - 2424859..2425065 (+) 207 WP_039647334.1 DUF951 domain-containing protein -
  ACFDHU_RS11980 (ACFDHU_11980) ychF 2425072..2426169 (+) 1098 WP_233648802.1 redox-regulated ATPase YchF -
  ACFDHU_RS11985 (ACFDHU_11985) - 2426900..2427535 (-) 636 WP_380570938.1 NAD(P)-dependent oxidoreductase -
  ACFDHU_RS11990 (ACFDHU_11990) rpsF 2427745..2428041 (+) 297 WP_037565086.1 30S ribosomal protein S6 -
  ACFDHU_RS11995 (ACFDHU_11995) ssbA 2428065..2428571 (+) 507 WP_037565084.1 single-stranded DNA-binding protein Machinery gene
  ACFDHU_RS12000 (ACFDHU_12000) rpsR 2428619..2428861 (+) 243 WP_037565082.1 30S ribosomal protein S18 -
  ACFDHU_RS12005 (ACFDHU_12005) - 2429001..2429702 (+) 702 WP_233648800.1 CPBP family intramembrane glutamic endopeptidase -
  ACFDHU_RS12010 (ACFDHU_12010) - 2429779..2430156 (-) 378 WP_107633526.1 iron chaperone -
  ACFDHU_RS12015 (ACFDHU_12015) - 2430315..2430617 (+) 303 WP_305850418.1 PadR family transcriptional regulator -
  ACFDHU_RS12020 (ACFDHU_12020) chrA 2430629..2431786 (+) 1158 WP_167705309.1 chromate efflux transporter -
  ACFDHU_RS12025 (ACFDHU_12025) bioB 2432035..2433027 (+) 993 WP_119635179.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18750.30 Da        Isoelectric Point: 5.1957

>NTDB_id=1055697 ACFDHU_RS11995 WP_037565084.1 2428065..2428571(+) (ssbA) [Staphylococcus hyicus strain SC373]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQSFGGQQQGQNSSYQNNNNHSSNNDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1055697 ACFDHU_RS11995 WP_037565084.1 2428065..2428571(+) (ssbA) [Staphylococcus hyicus strain SC373]
ATGCTTAACAGAGTTGTATTAGTTGGTCGATTAACAAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGTGTTGC
GACTTTTACTTTAGCGGTAAATCGTACATTTACAAATAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAAAACGTGAGCAATTTCTTGTTCAAAGGTAGTCTCGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACAGAAGTTGTGTGTGACAGTGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAAGTTTCGGTGGACAACAACAAGGTC
AAAATTCATCATATCAAAACAACAACAATCATTCATCGAACAATGATAACCCATTTGCAAATGCAAATGGTCCTATCGAT
ATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.407

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.363

Multiple sequence alignment