Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ACFDHT_RS01645 Genome accession   NZ_CP170227
Coordinates   360752..361417 (+) Length   221 a.a.
NCBI ID   WP_305850468.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC368     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 355752..366417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHT_RS01620 (ACFDHT_01615) - 356253..356921 (+) 669 WP_119635076.1 response regulator transcription factor -
  ACFDHT_RS01625 (ACFDHT_01620) - 357004..357918 (+) 915 WP_257071197.1 ABC transporter ATP-binding protein -
  ACFDHT_RS01630 (ACFDHT_01625) - 357911..358663 (+) 753 WP_167696245.1 hypothetical protein -
  ACFDHT_RS01635 (ACFDHT_01630) - 358680..359597 (+) 918 WP_257071200.1 HAMP domain-containing sensor histidine kinase -
  ACFDHT_RS01640 (ACFDHT_01635) - 360184..360621 (-) 438 WP_209260594.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein -
  ACFDHT_RS01645 (ACFDHT_01640) braR 360752..361417 (+) 666 WP_305850468.1 response regulator transcription factor Regulator
  ACFDHT_RS01650 (ACFDHT_01645) braS 361426..362337 (+) 912 WP_305850467.1 sensor histidine kinase Regulator
  ACFDHT_RS01655 (ACFDHT_01650) - 362428..363177 (+) 750 WP_039643665.1 ABC transporter ATP-binding protein -
  ACFDHT_RS01660 (ACFDHT_01655) - 363179..365140 (+) 1962 WP_305850466.1 ABC transporter permease -
  ACFDHT_RS01665 (ACFDHT_01660) - 365377..366003 (-) 627 WP_305850465.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25852.03 Da        Isoelectric Point: 6.6922

>NTDB_id=1055702 ACFDHT_RS01645 WP_305850468.1 360752..361417(+) (braR) [Staphylococcus hyicus strain SC368]
MKIMIVEDDFTIAESLVKELQKWNHEAVNVQDYYHIAEKFQTFQPHLVLLDINLPHLNGFHWCQEIRQKSQVPIIFISSA
SDNMNQMMAIQMGADDFIEKPFNLKLTIMKIQALLRRSYDFKVEQSQLHVKGCALVVDKALLIYQDQTLSLTLTELQILQ
QLFINEGHFVNRNTLIEHCWQSENFIDDNTLAVNMSRIRKKLKEIGLVDFIQTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1055702 ACFDHT_RS01645 WP_305850468.1 360752..361417(+) (braR) [Staphylococcus hyicus strain SC368]
ATGAAGATTATGATTGTTGAGGATGATTTTACAATTGCAGAAAGTTTAGTCAAAGAACTTCAAAAATGGAATCACGAAGC
GGTAAATGTGCAAGATTATTATCATATAGCTGAAAAATTCCAAACGTTTCAACCTCACCTCGTTCTTTTAGATATCAACC
TTCCACATCTTAATGGCTTTCATTGGTGTCAGGAAATACGGCAAAAATCTCAAGTACCTATTATATTTATTAGTTCGGCT
TCGGATAATATGAATCAAATGATGGCCATCCAAATGGGGGCTGATGATTTTATAGAAAAGCCGTTTAATTTAAAGTTAAC
AATTATGAAAATTCAAGCGTTATTGAGGCGATCCTATGACTTTAAAGTGGAACAATCTCAGTTACACGTAAAAGGATGTG
CGTTAGTTGTTGATAAAGCTTTATTGATATATCAAGATCAAACGCTGTCGCTAACGCTAACAGAGTTACAAATTTTACAA
CAATTATTTATAAATGAAGGACATTTTGTGAATCGTAATACATTAATTGAGCACTGTTGGCAATCTGAAAATTTCATTGA
TGACAATACGTTAGCAGTAAATATGTCTCGTATACGTAAGAAGTTAAAAGAAATAGGTTTAGTGGATTTTATACAAACGA
AAAAGAATGTAGGATACAAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-105)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

67.873

100

0.679

Multiple sequence alignment