Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BCV29_RS08840 Genome accession   NZ_CP170001
Coordinates   1974548..1976239 (-) Length   563 a.a.
NCBI ID   WP_102312935.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.B4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969548..1981239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV29_RS08820 (BCV29_08820) - 1970227..1971072 (-) 846 WP_010435266.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  BCV29_RS08825 (BCV29_08825) - 1971142..1972659 (-) 1518 WP_016767990.1 SPOR domain-containing protein -
  BCV29_RS08830 (BCV29_08830) aroB 1972740..1973828 (-) 1089 WP_010435273.1 3-dehydroquinate synthase -
  BCV29_RS08835 (BCV29_08835) aroK 1973853..1974371 (-) 519 WP_009848907.1 shikimate kinase AroK -
  BCV29_RS08840 (BCV29_08840) pilQ 1974548..1976239 (-) 1692 WP_102312935.1 type IV pilus secretin PilQ Machinery gene
  BCV29_RS08845 (BCV29_08845) pilP 1976299..1976817 (-) 519 WP_016767989.1 pilus assembly protein PilP Machinery gene
  BCV29_RS08850 (BCV29_08850) pilO 1976804..1977433 (-) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  BCV29_RS08855 (BCV29_08855) pilN 1977426..1978040 (-) 615 WP_010435288.1 PilN domain-containing protein Machinery gene
  BCV29_RS08860 (BCV29_08860) pilM 1978024..1979049 (-) 1026 WP_016767986.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 61461.98 Da        Isoelectric Point: 4.3574

>NTDB_id=1054287 BCV29_RS08840 WP_102312935.1 1974548..1976239(-) (pilQ) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MNRGLQGIVLSVVLFFTVMSHAETSNKLENIDFRVNKDKEAVIIIELATTTAVVDVQRVQEGLSIELINTQVDDDKLYLL
DVKDFATLVEGIEVFRELPSTRLLANISNDYQYEYNLKGRFIEVVVSQPKIDEAAIEKSILEKEGKLISINFQDIPVRNV
LQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELGE
LKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSMLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTVT
EGNLDELGVRWGVSSNNGSFTVGGSIEGNHPSQITPYDDNGGNSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDLE
LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPG
QVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHNVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKV
VIQ

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1054287 BCV29_RS08840 WP_102312935.1 1974548..1976239(-) (pilQ) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGAACAGAGGGCTGCAAGGCATTGTGTTGTCGGTGGTGTTGTTTTTTACGGTGATGAGTCATGCAGAGACCTCCAACAA
GCTGGAGAATATTGATTTCAGGGTCAACAAGGACAAAGAAGCGGTCATCATTATTGAACTGGCAACGACTACTGCGGTTG
TCGATGTTCAGCGAGTGCAAGAAGGGTTGAGTATTGAACTGATCAATACTCAGGTTGACGACGATAAACTGTACCTACTG
GACGTAAAGGACTTTGCGACTTTAGTTGAGGGGATTGAAGTCTTTAGGGAGTTGCCGAGCACTCGGCTGTTGGCAAACAT
CTCCAATGACTACCAATATGAGTACAACCTCAAAGGACGTTTTATTGAGGTTGTTGTGAGTCAGCCTAAGATCGATGAAG
CTGCGATTGAGAAAAGTATCTTAGAAAAAGAGGGCAAACTGATATCGATTAACTTCCAAGATATCCCGGTACGAAATGTC
TTGCAGCTGATTGCCGATTACAATGATTTCAATCTAGTCGTATCTGATTCGGTGGCAGGTAACCTAACTTTACGTTTAGA
TGGCGTACCTTGGCAGCAAGTTCTCGATATTATCTTGCAAGTTAAAGGCTTAGATAAACGTGTTGATGGCAACGTTATCT
TGGTCGCACCGAAAGCGGAACTCGATCTTCGAGAGCAGCAAGCGCTCGAGAAATCGCGTTTAGAAGAGGAGTTGGGTGAA
CTCAAATCTGAAATCATCAAAATCAACTTTGCTAAAGCGACCGACATTGCCGACATGATTGGCGGTGAAGGTGCGGTGAG
TATGTTGTCTGATCGAGGTTCAATTACCATTGATGAACGAACCAACTCAATGCTCATTCGTGAGTTGGAAGAAAACATTG
CGGTGATCCGAGGCATCATTGAATCGCTAGATATTCCGGTGAAGCAAGTTCAGATAGAGGCGCGCATCGTAACTGTCACC
GAGGGTAACCTGGATGAGCTTGGTGTGCGCTGGGGCGTTTCCTCAAACAACGGAAGCTTCACCGTTGGCGGTTCAATTGA
AGGCAACCACCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAATAGTGCGATTGATGATTATCTCAACGTCAATT
TAGGGGCAACATCGCCGAACGCATCGAGTATTGCGTTTCAGGTTGCTAAGTTGGGTTCGGATACGCTGCTCGATCTTGAA
TTATCAGCGCTACAACAAGAATCTAAAGCCGAAATAATTTCGAGCCCACGCTTAATCACCACCAATAAAAAACCGGCTTA
TATTGAGCAAGGTACGGAAATTCCTTATTTGGAGTCCTCTTCAAGTGGTGCAACGTCGGTCGCATTTAAGAAAGCGGTAT
TAAGTTTGAAGGTGACACCGCAGATCACGCCAGATAACCGCTTAGTGTTGGACTTGAGTGTGACTCAAGATAGACCTGGG
CAGGTAGTGAAAACAGGAACGGGCGAAGCAGTGGCCATTGATACTCAACGAATAGGAACGCAAGTGCTTGTTAATAATGG
TGAAACGGTCGTACTTGGCGGGATTTTTCAACATAATGTCAGCAGTACTGTCGACAAAGTTCCGCTGTTGGGCGACCTGC
CAGTTTTAGGCGCATTGTTCCGTCGCAGCTATGAAAATGTAGGCAAAAGTGAACTACTTATTTTTGTTACACCTAAAGTT
GTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(403-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

80.917

96.803

0.783
  pilQ Vibrio cholerae strain A1552

79.779

96.625

0.771
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

79.779

96.625

0.771
  pilQ Legionella pneumophila strain ERS1305867

42.857

96.98

0.416
  pilQ Legionella pneumophila strain Lp02

42.857

96.98

0.416
  pilQ Pseudomonas aeruginosa PAK

40.426

100

0.405
  pilQ Acinetobacter baumannii strain A118

37.167

100

0.396
  pilQ Acinetobacter baumannii D1279779

37.167

100

0.396
  comQ Acinetobacter baylyi ADP1

39.046

100

0.393

Multiple sequence alignment