Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BCV29_RS08850 | Genome accession | NZ_CP170001 |
| Coordinates | 1976804..1977433 (-) | Length | 209 a.a. |
| NCBI ID | WP_010435284.1 | Uniprot ID | A0AAN0LMD0 |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.B4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1971804..1982433
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV29_RS08830 (BCV29_08830) | aroB | 1972740..1973828 (-) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
| BCV29_RS08835 (BCV29_08835) | aroK | 1973853..1974371 (-) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| BCV29_RS08840 (BCV29_08840) | pilQ | 1974548..1976239 (-) | 1692 | WP_102312935.1 | type IV pilus secretin PilQ | Machinery gene |
| BCV29_RS08845 (BCV29_08845) | pilP | 1976299..1976817 (-) | 519 | WP_016767989.1 | pilus assembly protein PilP | Machinery gene |
| BCV29_RS08850 (BCV29_08850) | pilO | 1976804..1977433 (-) | 630 | WP_010435284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BCV29_RS08855 (BCV29_08855) | pilN | 1977426..1978040 (-) | 615 | WP_010435288.1 | PilN domain-containing protein | Machinery gene |
| BCV29_RS08860 (BCV29_08860) | pilM | 1978024..1979049 (-) | 1026 | WP_016767986.1 | type IV pilus assembly protein PilM | Machinery gene |
| BCV29_RS08865 (BCV29_08865) | - | 1979201..1981759 (+) | 2559 | WP_198589774.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24324.99 Da Isoelectric Point: 4.9074
>NTDB_id=1054289 BCV29_RS08850 WP_010435284.1 1976804..1977433(-) (pilO) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1054289 BCV29_RS08850 WP_010435284.1 1976804..1977433(-) (pilO) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTACCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTACCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.684 |
92.344 |
0.708 |
| pilO | Vibrio campbellii strain DS40M4 |
74.054 |
88.517 |
0.656 |