Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCV31_RS06280 | Genome accession | NZ_CP169999 |
| Coordinates | 1484725..1485135 (+) | Length | 136 a.a. |
| NCBI ID | WP_016783772.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.C10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1479725..1490135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV31_RS06265 (BCV31_06265) | pdhR | 1481655..1482416 (-) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BCV31_RS06270 (BCV31_06270) | ampD | 1482898..1483497 (-) | 600 | WP_102409372.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCV31_RS06275 (BCV31_06275) | nadC | 1483581..1484471 (+) | 891 | WP_004738163.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCV31_RS06280 (BCV31_06280) | pilA | 1484725..1485135 (+) | 411 | WP_016783772.1 | pilin | Machinery gene |
| BCV31_RS06285 (BCV31_06285) | pilB | 1485139..1486824 (+) | 1686 | WP_016795169.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV31_RS06290 (BCV31_06290) | pilC | 1486839..1488068 (+) | 1230 | WP_016795168.1 | type II secretion system F family protein | Machinery gene |
| BCV31_RS06295 (BCV31_06295) | pilD | 1488135..1489004 (+) | 870 | WP_016795167.1 | prepilin peptidase | Machinery gene |
| BCV31_RS06300 (BCV31_06300) | coaE | 1489007..1489621 (+) | 615 | WP_016795166.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14351.44 Da Isoelectric Point: 5.8508
>NTDB_id=1054230 BCV31_RS06280 WP_016783772.1 1484725..1485135(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MNNKHKRTSQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVTKSQVSSALATIKSLVTPAELIIQEEGDISGAITLLGVSA
GSNTLGTLSIGTDKKSIEFKFNDGSLKDKKLTMTRDDNTGWSCDPDSGVPSVEGCS
MNNKHKRTSQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVTKSQVSSALATIKSLVTPAELIIQEEGDISGAITLLGVSA
GSNTLGTLSIGTDKKSIEFKFNDGSLKDKKLTMTRDDNTGWSCDPDSGVPSVEGCS
Nucleotide
Download Length: 411 bp
>NTDB_id=1054230 BCV31_RS06280 WP_016783772.1 1484725..1485135(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGAATAACAAACACAAAAGAACAAGTCAGAAAGGCTTTACGTTAATTGAATTGATGATCGTCGTGGCGATTATTGGAGT
GTTATCGGCGATAGCTGTCCCTGCATATAAAGACTATGTAACAAAAAGTCAGGTTTCATCTGCACTAGCTACAATTAAAT
CACTTGTCACACCCGCTGAACTTATCATTCAAGAGGAAGGGGATATCAGTGGTGCGATAACCCTTCTTGGGGTATCTGCG
GGTTCCAATACTCTAGGAACACTATCTATTGGTACTGATAAAAAGTCGATTGAATTCAAATTTAACGATGGGAGCCTCAA
AGACAAAAAGTTAACTATGACAAGAGATGATAATACTGGCTGGTCATGCGACCCAGACTCTGGCGTTCCATCAGTTGAAG
GTTGCAGCTAA
ATGAATAACAAACACAAAAGAACAAGTCAGAAAGGCTTTACGTTAATTGAATTGATGATCGTCGTGGCGATTATTGGAGT
GTTATCGGCGATAGCTGTCCCTGCATATAAAGACTATGTAACAAAAAGTCAGGTTTCATCTGCACTAGCTACAATTAAAT
CACTTGTCACACCCGCTGAACTTATCATTCAAGAGGAAGGGGATATCAGTGGTGCGATAACCCTTCTTGGGGTATCTGCG
GGTTCCAATACTCTAGGAACACTATCTATTGGTACTGATAAAAAGTCGATTGAATTCAAATTTAACGATGGGAGCCTCAA
AGACAAAAAGTTAACTATGACAAGAGATGATAATACTGGCTGGTCATGCGACCCAGACTCTGGCGTTCCATCAGTTGAAG
GTTGCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
53.237 |
100 |
0.544 |
| pilA | Pseudomonas aeruginosa PAK |
40.136 |
100 |
0.434 |
| pilA | Vibrio cholerae strain A1552 |
41.667 |
97.059 |
0.404 |
| pilA | Vibrio cholerae C6706 |
41.667 |
97.059 |
0.404 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.667 |
97.059 |
0.404 |
| pilA | Acinetobacter baumannii strain A118 |
38.849 |
100 |
0.397 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.842 |
97.794 |
0.36 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.516 |
91.176 |
0.36 |