Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCV31_RS06290 Genome accession   NZ_CP169999
Coordinates   1486839..1488068 (+) Length   409 a.a.
NCBI ID   WP_016795168.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.C10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481839..1493068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV31_RS06270 (BCV31_06270) ampD 1482898..1483497 (-) 600 WP_102409372.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BCV31_RS06275 (BCV31_06275) nadC 1483581..1484471 (+) 891 WP_004738163.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCV31_RS06280 (BCV31_06280) pilA 1484725..1485135 (+) 411 WP_016783772.1 pilin Machinery gene
  BCV31_RS06285 (BCV31_06285) pilB 1485139..1486824 (+) 1686 WP_016795169.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCV31_RS06290 (BCV31_06290) pilC 1486839..1488068 (+) 1230 WP_016795168.1 type II secretion system F family protein Machinery gene
  BCV31_RS06295 (BCV31_06295) pilD 1488135..1489004 (+) 870 WP_016795167.1 prepilin peptidase Machinery gene
  BCV31_RS06300 (BCV31_06300) coaE 1489007..1489621 (+) 615 WP_016795166.1 dephospho-CoA kinase -
  BCV31_RS06305 (BCV31_06305) zapD 1489648..1490388 (+) 741 WP_010435917.1 cell division protein ZapD -
  BCV31_RS06310 (BCV31_06310) yacG 1490470..1490667 (+) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCV31_RS06315 (BCV31_06315) rplS 1490948..1491301 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCV31_RS06320 (BCV31_06320) trmD 1491361..1492101 (-) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCV31_RS06325 (BCV31_06325) rimM 1492128..1492682 (-) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCV31_RS06330 (BCV31_06330) rpsP 1492707..1492955 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45204.14 Da        Isoelectric Point: 10.1000

>NTDB_id=1054232 BCV31_RS06290 WP_016795168.1 1486839..1488068(+) (pilC) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MSSKSKQSQLKNYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATTL
VVHQLCQRSYSIRLSASRLVLRFPVLGSVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054232 BCV31_RS06290 WP_016795168.1 1486839..1488068(+) (pilC) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTTACTGAATTAGAAGTACGGGAAAAGCTCAAAGAACAGCATATCCAGATTAAGAAAATCAAAAAGA
AAAGTATTTCAGCCGTCACTCGTTTAACTCATCGAGTCAAAGCCAAAGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATTGTACAAGCCATCAAGCTAGTCTCAGACAATCACCGCAAAGCTGAAATGAAATCTAT
TTTGTCTCATATATGTAAGGGCGTTGAGGCAGGAACCCCGATATCAAAAGCAATGCGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACGGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACATATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTAACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCACGCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTTGG
TAGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGCTCTGGTATTCCCATCTTAA
TGAGCCTCAAAACCACCGCAAAGACTGCAGGTAATCTGCATTATGAATCTGCGATCATCGAGGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATCGCGATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAATTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80

97.8

0.782
  pilC Vibrio campbellii strain DS40M4

73.645

99.267

0.731
  pilC Acinetobacter baylyi ADP1

42.298

100

0.423
  pilC Acinetobacter baumannii D1279779

41.832

98.778

0.413
  pilC Legionella pneumophila strain ERS1305867

41.814

97.066

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.594

98.778

0.401
  pilG Neisseria gonorrhoeae MS11

40.1

97.555

0.391
  pilG Neisseria meningitidis 44/76-A

39.85

97.555

0.389

Multiple sequence alignment