Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BCV31_RS06295 | Genome accession | NZ_CP169999 |
| Coordinates | 1488135..1489004 (+) | Length | 289 a.a. |
| NCBI ID | WP_016795167.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.C10 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1483135..1494004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV31_RS06275 (BCV31_06275) | nadC | 1483581..1484471 (+) | 891 | WP_004738163.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCV31_RS06280 (BCV31_06280) | pilA | 1484725..1485135 (+) | 411 | WP_016783772.1 | pilin | Machinery gene |
| BCV31_RS06285 (BCV31_06285) | pilB | 1485139..1486824 (+) | 1686 | WP_016795169.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV31_RS06290 (BCV31_06290) | pilC | 1486839..1488068 (+) | 1230 | WP_016795168.1 | type II secretion system F family protein | Machinery gene |
| BCV31_RS06295 (BCV31_06295) | pilD | 1488135..1489004 (+) | 870 | WP_016795167.1 | prepilin peptidase | Machinery gene |
| BCV31_RS06300 (BCV31_06300) | coaE | 1489007..1489621 (+) | 615 | WP_016795166.1 | dephospho-CoA kinase | - |
| BCV31_RS06305 (BCV31_06305) | zapD | 1489648..1490388 (+) | 741 | WP_010435917.1 | cell division protein ZapD | - |
| BCV31_RS06310 (BCV31_06310) | yacG | 1490470..1490667 (+) | 198 | WP_010435916.1 | DNA gyrase inhibitor YacG | - |
| BCV31_RS06315 (BCV31_06315) | rplS | 1490948..1491301 (-) | 354 | WP_004735514.1 | 50S ribosomal protein L19 | - |
| BCV31_RS06320 (BCV31_06320) | trmD | 1491361..1492101 (-) | 741 | WP_010435912.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BCV31_RS06325 (BCV31_06325) | rimM | 1492128..1492682 (-) | 555 | WP_016768202.1 | ribosome maturation factor RimM | - |
| BCV31_RS06330 (BCV31_06330) | rpsP | 1492707..1492955 (-) | 249 | WP_004410028.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32539.74 Da Isoelectric Point: 7.6347
>NTDB_id=1054233 BCV31_RS06295 WP_016795167.1 1488135..1489004(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIIMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIIMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
Nucleotide
Download Length: 870 bp
>NTDB_id=1054233 BCV31_RS06295 WP_016795167.1 1488135..1489004(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATAATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTTTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAATCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGATAAAGCCTTTCCGTTTGGCCCCTACCTTGCGATTGC
GGGATGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATAATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTTTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAATCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGATAAAGCCTTTCCGTTTGGCCCCTACCTTGCGATTGC
GGGATGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
74.74 |
100 |
0.747 |
| pilD | Vibrio cholerae strain A1552 |
69.097 |
99.654 |
0.689 |
| pilD | Acinetobacter nosocomialis M2 |
50.936 |
92.388 |
0.471 |
| pilD | Acinetobacter baumannii D1279779 |
50.562 |
92.388 |
0.467 |
| pilD | Neisseria gonorrhoeae MS11 |
48.263 |
89.619 |
0.433 |