Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACB691_RS11050 Genome accession   NZ_CP169739
Coordinates   2158126..2158461 (+) Length   111 a.a.
NCBI ID   WP_000982008.1    Uniprot ID   A0AAX3QFD4
Organism   Bacillus paranthracis strain mr-1B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2153126..2163461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB691_RS11025 - 2153360..2154151 (-) 792 WP_000499682.1 hypothetical protein -
  ACB691_RS11030 - 2154261..2154908 (+) 648 WP_000165943.1 HD domain-containing protein -
  ACB691_RS11035 - 2154905..2156800 (+) 1896 WP_000783207.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACB691_RS11040 - 2156876..2157607 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  ACB691_RS11045 - 2157713..2157967 (+) 255 WP_000975123.1 DUF4318 domain-containing protein -
  ACB691_RS11050 ssbA 2158126..2158461 (+) 336 WP_000982008.1 single-stranded DNA-binding protein Machinery gene
  ACB691_RS11055 - 2158490..2159080 (-) 591 WP_000943171.1 TetR/AcrR family transcriptional regulator -
  ACB691_RS11060 - 2159203..2160336 (-) 1134 WP_001066843.1 FAD-dependent monooxygenase -
  ACB691_RS11065 - 2160595..2161722 (+) 1128 WP_000692572.1 conserved virulence factor C family protein -
  ACB691_RS11070 - 2161726..2162109 (+) 384 WP_000634897.1 thiol-disulfide oxidoreductase DCC family protein -
  ACB691_RS11075 - 2162193..2162627 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  ACB691_RS11080 - 2162677..2163453 (+) 777 WP_000637441.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12715.51 Da        Isoelectric Point: 9.4344

>NTDB_id=1052711 ACB691_RS11050 WP_000982008.1 2158126..2158461(+) (ssbA) [Bacillus paranthracis strain mr-1B]
MMNRVVLIGRLTKEPELYYTKQGVAYARACVAVNRGFRNSLGDQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1052711 ACB691_RS11050 WP_000982008.1 2158126..2158461(+) (ssbA) [Bacillus paranthracis strain mr-1B]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGCATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGATCAACAAGTAGACTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGCTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATAACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

100

0.505
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbA Streptococcus mutans UA159

39.091

99.099

0.387

Multiple sequence alignment