Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACETK7_RS21210 Genome accession   NZ_CP169287
Coordinates   4561296..4562513 (-) Length   405 a.a.
NCBI ID   WP_214378789.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18_CNT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4556296..4567513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK7_RS21175 (ACETK7_21175) - 4556766..4557215 (+) 450 WP_375379889.1 methyl-accepting chemotaxis protein -
  ACETK7_RS21180 (ACETK7_21180) - 4557234..4557476 (-) 243 WP_214378801.1 DUF2790 domain-containing protein -
  ACETK7_RS21185 (ACETK7_21185) - 4558121..4558810 (+) 690 WP_214378799.1 energy-coupling factor ABC transporter permease -
  ACETK7_RS21190 (ACETK7_21190) - 4558868..4559203 (-) 336 WP_214378797.1 hypothetical protein -
  ACETK7_RS21195 (ACETK7_21195) yacG 4559605..4559805 (-) 201 WP_214378795.1 DNA gyrase inhibitor YacG -
  ACETK7_RS21200 (ACETK7_21200) coaE 4559802..4560425 (-) 624 WP_214378793.1 dephospho-CoA kinase -
  ACETK7_RS21205 (ACETK7_21205) pilD 4560422..4561294 (-) 873 WP_214378791.1 A24 family peptidase Machinery gene
  ACETK7_RS21210 (ACETK7_21210) pilC 4561296..4562513 (-) 1218 WP_214378789.1 type II secretion system F family protein Machinery gene
  ACETK7_RS21215 (ACETK7_21215) pilB 4562516..4564216 (-) 1701 WP_214378787.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACETK7_RS21220 (ACETK7_21220) pilA 4564442..4564852 (+) 411 WP_214378785.1 pilin Machinery gene
  ACETK7_RS21225 (ACETK7_21225) - 4565168..4565521 (+) 354 WP_214378783.1 BON domain-containing protein -
  ACETK7_RS21230 (ACETK7_21230) - 4565746..4566042 (-) 297 WP_214384932.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44273.27 Da        Isoelectric Point: 9.9826

>NTDB_id=1050227 ACETK7_RS21210 WP_214378789.1 4561296..4562513(-) (pilC) [Pseudomonas hormoni strain G20-18_CNT1]
MAVKAAKISVYAWEGTDKKGTKMTGELTGQNPALIKAQLRKQGINPGKVRKKSASILSLGQRIKAHDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVIVAIIVTGILLIKVVPQFKSVFEGFGAQLPAFTLMVISLSQFLQDWWWLMLGVLIPVIFGVR
HAFKKSQGFRDWTDTWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTSGVFPNMAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGNAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1050227 ACETK7_RS21210 WP_214378789.1 4561296..4562513(-) (pilC) [Pseudomonas hormoni strain G20-18_CNT1]
ATGGCGGTCAAAGCAGCGAAAATCAGTGTGTACGCCTGGGAAGGCACCGATAAAAAAGGCACGAAAATGACCGGCGAACT
CACCGGTCAGAACCCGGCGTTGATCAAGGCGCAATTGCGCAAGCAAGGCATCAACCCCGGTAAGGTGCGCAAGAAATCCG
CATCGATTCTCAGCCTCGGCCAACGCATCAAGGCGCATGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCCGGTGTGCCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGATAACCCGGCCATGCGTAAACTGGTGGACGA
AGTGAAACAGGAGGTCGCGGCGGGTAACAGCTTCGCCGCGGCCCTGCGCAAAAAGCCCCAGTATTTCGACGAGCTCTATT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGCGCGCTGGACACCCTGCTGGAGCGCGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAAATCAAGAAAGCCATGACTTATCCGCTGGCCGTGGTGATCGTCGCGATCATCGTCACCGGGAT
TCTGCTGATCAAGGTGGTGCCGCAGTTCAAGTCGGTGTTTGAAGGTTTTGGTGCCCAACTGCCTGCGTTCACGTTGATGG
TCATCAGCCTGTCGCAGTTCCTGCAGGATTGGTGGTGGTTGATGCTTGGCGTGCTGATCCCTGTGATATTCGGTGTGCGC
CACGCCTTCAAGAAATCTCAGGGCTTTCGGGACTGGACAGACACCTGGCTGCTGAAACTGCCGCTGGTTGGCGCGTTGAT
GTACAAATCCGCCGTGGCCCGTTACGCCCGTACACTGTCGACCACCTTCGCCGCCGGCGTCCCGCTTGTGGAGGCGCTGG
AGTCAGTGGCGGGCGCGACCGGCAACATCGTGTTCAAGCGTGCGGTGCTGCGCATCAAGCAGGATGTGTCGACGGGGATG
CAGCTGAACTTCTCCATGCGCACCTCCGGCGTCTTTCCGAACATGGCGATTCAGATGACGGCCATTGGCGAAGAGTCCGG
CGCACTGGACGACATGCTCGACAAGGTCGCCAGTTTCTATGAGGCCGAGGTCGACAACATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCAATGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.346

100

0.723
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

42.432

99.506

0.422
  pilG Neisseria meningitidis 44/76-A

42.118

100

0.422
  pilC Vibrio cholerae strain A1552

42.602

96.79

0.412
  pilC Vibrio campbellii strain DS40M4

40.796

99.259

0.405
  pilC Thermus thermophilus HB27

37.905

99.012

0.375

Multiple sequence alignment