Detailed information NTG1050226

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACETK7_RS21205
• Genome accession: NZ_CP169287
• Coordinates: 4560422..4561294 (-)
• Length: 290 a.a.
• NCBI ID: WP_214378791.1
• Uniprot ID: -
• Organism: Pseudomonas hormoni strain G20-18_CNT1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4555422..4566294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACETK7_RS21175 (ACETK7_21175)	-	4556766..4557215 (+)	450	WP_375379889.1	methyl-accepting chemotaxis protein	-
ACETK7_RS21180 (ACETK7_21180)	-	4557234..4557476 (-)	243	WP_214378801.1	DUF2790 domain-containing protein	-
ACETK7_RS21185 (ACETK7_21185)	-	4558121..4558810 (+)	690	WP_214378799.1	energy-coupling factor ABC transporter permease	-
ACETK7_RS21190 (ACETK7_21190)	-	4558868..4559203 (-)	336	WP_214378797.1	hypothetical protein	-
ACETK7_RS21195 (ACETK7_21195)	yacG	4559605..4559805 (-)	201	WP_214378795.1	DNA gyrase inhibitor YacG	-
ACETK7_RS21200 (ACETK7_21200)	coaE	4559802..4560425 (-)	624	WP_214378793.1	dephospho-CoA kinase	-
ACETK7_RS21205 (ACETK7_21205)	pilD	4560422..4561294 (-)	873	WP_214378791.1	A24 family peptidase	Machinery gene
ACETK7_RS21210 (ACETK7_21210)	pilC	4561296..4562513 (-)	1218	WP_214378789.1	type II secretion system F family protein	Machinery gene
ACETK7_RS21215 (ACETK7_21215)	pilB	4562516..4564216 (-)	1701	WP_214378787.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACETK7_RS21220 (ACETK7_21220)	pilA	4564442..4564852 (+)	411	WP_214378785.1	pilin	Machinery gene
ACETK7_RS21225 (ACETK7_21225)	-	4565168..4565521 (+)	354	WP_214378783.1	BON domain-containing protein	-
ACETK7_RS21230 (ACETK7_21230)	-	4565746..4566042 (-)	297	WP_214384932.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32141.50 Da
• Isoelectric Point: 8.3418

>NTDB_id=1050226 ACETK7_RS21205 WP_214378791.1 4560422..4561294(-) (pilD) [Pseudomonas hormoni strain G20-18_CNT1]
MPLNEILTVYPLAFVVIALTVGLLVGSFLNVVIWRLPKMLAREWRLQAYDILGLPGDTPQPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSSCATPISKRYPLTELACGLLSAFIAWHFGFGWQAVMVLMLSWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFELFVPLTEALWGAIAGYMALWSVFWLFKLITGKDGIGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVILLSLRNAKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1050226 ACETK7_RS21205 WP_214378791.1 4560422..4561294(-) (pilD) [Pseudomonas hormoni strain G20-18_CNT1]
ATGCCCTTGAACGAAATCCTGACCGTGTACCCGTTGGCGTTTGTCGTCATTGCACTGACGGTCGGCTTGCTGGTCGGCAG
CTTCCTCAACGTGGTGATCTGGCGCCTGCCGAAAATGCTCGCGCGCGAGTGGCGACTGCAGGCCTACGACATTCTGGGCC
TGCCGGGCGATACGCCGCAGCCGACCTATAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGTGGGCACAGGATCCGC
GCTTGGGAAAACATTCCGGTGCTCAGTTATGTGTTTTTACGTGGGCGATGCTCGAGTTGCGCAACGCCCATCAGCAAACG
CTATCCATTGACCGAACTGGCCTGCGGCCTGCTGTCAGCGTTCATCGCCTGGCATTTCGGTTTCGGTTGGCAGGCCGTGA
TGGTGCTGATGTTGAGTTGGGGTTTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTACTGGTG
CTGCCGCTGCTGTGGCTGGGATTGATCGTCAACAGCTTCGAGTTGTTCGTGCCATTGACTGAGGCACTGTGGGGCGCAAT
TGCGGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGATGGCATCGGCCACGGCGATT
TCAAGCTGTTGGCCATGCTGGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACCCTTTTGTTGTCATCTCTGGTCGGA
GCCGTTATCGGCGTTATTTTGCTGAGCCTGCGCAACGCGAAAACCTCGACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.482	97.241	0.51
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	48.727	94.828	0.462
pilD	Acinetobacter nosocomialis M2	48	94.828	0.455
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452