Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACEUKD_RS13525 Genome accession   NZ_CP169050
Coordinates   2897057..2898793 (-) Length   578 a.a.
NCBI ID   WP_374092745.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892057..2903793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS13505 (ACEUKD_13505) - 2892742..2893581 (-) 840 WP_047009939.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  ACEUKD_RS13510 (ACEUKD_13510) - 2893651..2895165 (-) 1515 WP_006743221.1 SPOR domain-containing protein -
  ACEUKD_RS13515 (ACEUKD_13515) aroB 2895218..2896318 (-) 1101 WP_114324102.1 3-dehydroquinate synthase -
  ACEUKD_RS13520 (ACEUKD_13520) aroK 2896351..2896869 (-) 519 WP_005381319.1 shikimate kinase AroK -
  ACEUKD_RS13525 (ACEUKD_13525) pilQ 2897057..2898793 (-) 1737 WP_374092745.1 type IV pilus secretin PilQ Machinery gene
  ACEUKD_RS13530 (ACEUKD_13530) pilP 2898825..2899340 (-) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  ACEUKD_RS13535 (ACEUKD_13535) pilO 2899330..2899923 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEUKD_RS13540 (ACEUKD_13540) pilN 2899916..2900491 (-) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  ACEUKD_RS13545 (ACEUKD_13545) pilM 2900475..2901491 (-) 1017 WP_374092744.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63333.21 Da        Isoelectric Point: 4.4474

>NTDB_id=1049562 ACEUKD_RS13525 WP_374092745.1 2897057..2898793(-) (pilQ) [Vibrio diabolicus strain SF42]
MRQGLTRTTRILTGLFSLWLFVFLAPLVAAEEVSSNALKSIDFRTNKDKDAVIVVELASPAAIVDVKRVQEGLSIDLLNT
SVKDEQLYLLDVKDFSTVVESVEVFRDTSTTRLVAHINEEYTHDYRLTGRFLEIKVAKIKPNEKAPDKSILEKEGKLISI
NFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLE
KQQLEQTMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVKQV
QIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGVGIDDFLNVNLAATSPNATSIA
FQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVTFKKAVLSLKVTPQITPD
NRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYE
NVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1049562 ACEUKD_RS13525 WP_374092745.1 2897057..2898793(-) (pilQ) [Vibrio diabolicus strain SF42]
ATGAGACAAGGATTAACACGTACAACAAGGATACTAACTGGGCTCTTCTCCTTATGGTTGTTTGTATTTTTAGCCCCTTT
AGTGGCAGCAGAAGAAGTATCGTCTAATGCCTTAAAGAGTATCGACTTTCGCACTAATAAAGATAAAGACGCCGTTATAG
TCGTTGAACTGGCGTCACCTGCCGCGATTGTCGATGTCAAACGCGTACAGGAAGGGTTAAGTATCGATTTGCTTAATACT
TCGGTAAAAGACGAGCAACTGTATCTCCTAGACGTAAAAGATTTCTCGACTGTGGTTGAAAGCGTAGAGGTATTTCGCGA
TACCTCAACTACGCGCTTGGTTGCGCACATTAATGAAGAATATACGCATGATTACCGTTTAACGGGACGATTCTTGGAAA
TCAAAGTGGCTAAGATCAAACCCAATGAGAAAGCCCCGGATAAAAGCATTCTAGAAAAAGAAGGCAAGCTCATTTCGATT
AACTTCCAAGATATTCCTGTACGTAATGTGTTACAGCTGATTGCTGACTACAACCAGTTCAACTTGGTTGTTTCAGACTC
CGTAGAAGGTAACCTTACACTTCGTCTTGATGGTGTTCCGTGGCAGCAAGTGTTGGATATTATTTTGCAAGTTAAGGGGT
TAGATAAGCGTGTTGATGGCAACGTGATTCTGGTTGCTCCAACAGATGAGCTTGATCTGCGCGAAAAACAGCAACTCGAA
AAGCAGCAGCTAGAACAAACGATGGGAGAGCTTTCGTCTGAAATCATCAAGGTAAACTTCGCTAAAGCATCAGATATTGC
AGAGATGATCAACGGAGAAGGGAACATCAGTATGTTGTCTGAGCGAGGCAGTATGACCATTGATGAACGGACTAACTCGT
TATTGATTCGTGAGCTACCTGAAAACATTGAAGTGATTCGAGAAATTATTGAATCTTTGGATATCCCGGTGAAGCAGGTT
CAAATTGAAGCGCGTATTGTGACCATCAATGAAGGCAACATGGACGAGTTGGGAATTCGCTGGGGCTTTACCTCTATTAA
TGGCAATAACACGGTTGGTGGCTCTATCGAAAACAACCTTGCCACGATCGGTTTATATAACGGTGGTGGTGAAGGAGAAG
ACGGTGGTGATGGAGTAGGTATCGATGACTTCCTAAACGTAAACTTAGCTGCAACCAGTCCAAACGCGACCAGCATTGCT
TTTCAGGTTGCAAAATTAGGCTCAGACACCTTGTTAGACCTCGAGCTTTCTGCGCTGCAACAAGAGTCCAAAGCTGAGAT
TATCTCAAGCCCACGTTTGATCACTACCAATAAGAAGCCTGCCTATATTGAGCAAGGTACCGAGATACCTTATCTAGAGT
CCTCATCGAGTGGTGCCACGACGGTAACGTTCAAAAAAGCAGTATTGAGTTTGAAGGTGACGCCACAAATTACACCGGAT
AACCGCCTTGTGTTGGACTTAAGCGTTACGCAAGATAGACCTGGACAAGTCGTGAAAACAGGTACTGGTGAAGCCGTTGC
GATTGATACTCAACGTATCGGGACGCAAGTGTTAGTAAATAACGGTGAAACCGTCGTTCTTGGTGGTATTTTCCAGCACA
GCATTACTAATTCGGTGGACAAAGTGCCTTTGTTAGGCGATCTGCCACTATTAGGTGCGCTTTTCCGTCGAAGTTATGAA
AATGTTGGCAAAAGTGAGCTGTTGATTTTCGTCACCCCTAAGGTGGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(254-319)

Bacterial type II and III secretion system protein (Secretin)

(418-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

93.426

100

0.934
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

74.871

100

0.753
  pilQ Vibrio cholerae strain A1552

74.871

100

0.753
  pilQ Legionella pneumophila strain ERS1305867

41.039

96.54

0.396
  pilQ Legionella pneumophila strain Lp02

41.039

96.54

0.396
  pilQ Pseudomonas aeruginosa PAK

39.092

99.135

0.388
  pilQ Acinetobacter baumannii strain A118

36.577

100

0.377
  pilQ Acinetobacter baumannii D1279779

36.577

100

0.377
  comQ Acinetobacter baylyi ADP1

37.478

100

0.375

Multiple sequence alignment