Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACEUKD_RS13540 Genome accession   NZ_CP169050
Coordinates   2899916..2900491 (-) Length   191 a.a.
NCBI ID   WP_005395717.1    Uniprot ID   A0AAE4S901
Organism   Vibrio diabolicus strain SF42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894916..2905491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS13515 (ACEUKD_13515) aroB 2895218..2896318 (-) 1101 WP_114324102.1 3-dehydroquinate synthase -
  ACEUKD_RS13520 (ACEUKD_13520) aroK 2896351..2896869 (-) 519 WP_005381319.1 shikimate kinase AroK -
  ACEUKD_RS13525 (ACEUKD_13525) pilQ 2897057..2898793 (-) 1737 WP_374092745.1 type IV pilus secretin PilQ Machinery gene
  ACEUKD_RS13530 (ACEUKD_13530) pilP 2898825..2899340 (-) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  ACEUKD_RS13535 (ACEUKD_13535) pilO 2899330..2899923 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEUKD_RS13540 (ACEUKD_13540) pilN 2899916..2900491 (-) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  ACEUKD_RS13545 (ACEUKD_13545) pilM 2900475..2901491 (-) 1017 WP_374092744.1 type IV pilus biogenesis protein PilM Machinery gene
  ACEUKD_RS13550 (ACEUKD_13550) - 2901635..2904196 (+) 2562 WP_074191325.1 penicillin-binding protein 1A -
  ACEUKD_RS13555 (ACEUKD_13555) oxyR 2904248..2905159 (-) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22325.80 Da        Isoelectric Point: 7.0774

>NTDB_id=1049565 ACEUKD_RS13540 WP_005395717.1 2899916..2900491(-) (pilN) [Vibrio diabolicus strain SF42]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKAEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1049565 ACEUKD_RS13540 WP_005395717.1 2899916..2900491(-) (pilN) [Vibrio diabolicus strain SF42]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTTGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGATCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAACACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGCGGA
GGCACAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592

Multiple sequence alignment