Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACEUKD_RS13535 | Genome accession | NZ_CP169050 |
| Coordinates | 2899330..2899923 (-) | Length | 197 a.a. |
| NCBI ID | WP_012841351.1 | Uniprot ID | A0AAE4SAG9 |
| Organism | Vibrio diabolicus strain SF42 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2894330..2904923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEUKD_RS13515 (ACEUKD_13515) | aroB | 2895218..2896318 (-) | 1101 | WP_114324102.1 | 3-dehydroquinate synthase | - |
| ACEUKD_RS13520 (ACEUKD_13520) | aroK | 2896351..2896869 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ACEUKD_RS13525 (ACEUKD_13525) | pilQ | 2897057..2898793 (-) | 1737 | WP_374092745.1 | type IV pilus secretin PilQ | Machinery gene |
| ACEUKD_RS13530 (ACEUKD_13530) | pilP | 2898825..2899340 (-) | 516 | WP_005395715.1 | pilus assembly protein PilP | Machinery gene |
| ACEUKD_RS13535 (ACEUKD_13535) | pilO | 2899330..2899923 (-) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACEUKD_RS13540 (ACEUKD_13540) | pilN | 2899916..2900491 (-) | 576 | WP_005395717.1 | PilN domain-containing protein | Machinery gene |
| ACEUKD_RS13545 (ACEUKD_13545) | pilM | 2900475..2901491 (-) | 1017 | WP_374092744.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACEUKD_RS13550 (ACEUKD_13550) | - | 2901635..2904196 (+) | 2562 | WP_074191325.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23042.45 Da Isoelectric Point: 4.7906
>NTDB_id=1049564 ACEUKD_RS13535 WP_012841351.1 2899330..2899923(-) (pilO) [Vibrio diabolicus strain SF42]
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=1049564 ACEUKD_RS13535 WP_012841351.1 2899330..2899923(-) (pilO) [Vibrio diabolicus strain SF42]
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTAATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAATTATTGCTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACTCGTATCGACTGGGGTGAAAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTAATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAATTATTGCTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACTCGTATCGACTGGGGTGAAAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.051 |
100 |
0.701 |