Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEUKD_RS12250 | Genome accession | NZ_CP169050 |
| Coordinates | 2646512..2646934 (+) | Length | 140 a.a. |
| NCBI ID | WP_256950981.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain SF42 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2641512..2651934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEUKD_RS12235 (ACEUKD_12235) | pdhR | 2643544..2644311 (-) | 768 | WP_005396680.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACEUKD_RS12240 (ACEUKD_12240) | ampD | 2644717..2645268 (-) | 552 | WP_046875077.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACEUKD_RS12245 (ACEUKD_12245) | nadC | 2645361..2646248 (+) | 888 | WP_005379983.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACEUKD_RS12250 (ACEUKD_12250) | pilA | 2646512..2646934 (+) | 423 | WP_256950981.1 | pilin | Machinery gene |
| ACEUKD_RS12255 (ACEUKD_12255) | pilB | 2646943..2648628 (+) | 1686 | WP_374092621.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACEUKD_RS12260 (ACEUKD_12260) | pilC | 2648652..2649875 (+) | 1224 | WP_017635918.1 | type II secretion system F family protein | Machinery gene |
| ACEUKD_RS12265 (ACEUKD_12265) | pilD | 2649940..2650809 (+) | 870 | WP_012841418.1 | A24 family peptidase | Machinery gene |
| ACEUKD_RS12270 (ACEUKD_12270) | coaE | 2650810..2651424 (+) | 615 | WP_047008979.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14565.61 Da Isoelectric Point: 9.0360
>NTDB_id=1049549 ACEUKD_RS12250 WP_256950981.1 2646512..2646934(+) (pilA) [Vibrio diabolicus strain SF42]
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRTNVETYVIENGSFPSTSGALALPTS
QFGVVDYDNVTSAAGGIKFTFNGSGVSPDVVSKHVTLSRTSAGAWSCSSDIAAELKPKGC
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRTNVETYVIENGSFPSTSGALALPTS
QFGVVDYDNVTSAAGGIKFTFNGSGVSPDVVSKHVTLSRTSAGAWSCSSDIAAELKPKGC
Nucleotide
Download Length: 423 bp
>NTDB_id=1049549 ACEUKD_RS12250 WP_256950981.1 2646512..2646934(+) (pilA) [Vibrio diabolicus strain SF42]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGCTTTACTCTGATTGAGTTAATGATTGTAGTGGCGGTAATTGGTGTTTT
AGCGGCAATTGCTGTTCCACAGTACCAAAAGTATGTTGCTAAAAGTGAAGCAGCTTCAGCGCTAGCATCAATTACCGGAC
ACAGAACAAATGTCGAAACTTACGTTATTGAAAACGGCTCATTCCCATCAACTTCTGGAGCTCTAGCACTGCCAACATCT
CAATTTGGTGTGGTTGACTATGATAATGTTACTAGCGCCGCTGGTGGAATTAAGTTTACTTTCAACGGCTCAGGTGTTAG
CCCTGACGTTGTATCTAAGCATGTAACCCTATCTAGAACCTCGGCAGGAGCTTGGAGTTGCTCTTCTGATATTGCAGCTG
AACTAAAACCTAAAGGTTGTTAG
ATGAAACACAGTAAACAGAAAAAACAGCAAGGCTTTACTCTGATTGAGTTAATGATTGTAGTGGCGGTAATTGGTGTTTT
AGCGGCAATTGCTGTTCCACAGTACCAAAAGTATGTTGCTAAAAGTGAAGCAGCTTCAGCGCTAGCATCAATTACCGGAC
ACAGAACAAATGTCGAAACTTACGTTATTGAAAACGGCTCATTCCCATCAACTTCTGGAGCTCTAGCACTGCCAACATCT
CAATTTGGTGTGGTTGACTATGATAATGTTACTAGCGCCGCTGGTGGAATTAAGTTTACTTTCAACGGCTCAGGTGTTAG
CCCTGACGTTGTATCTAAGCATGTAACCCTATCTAGAACCTCGGCAGGAGCTTGGAGTTGCTCTTCTGATATTGCAGCTG
AACTAAAACCTAAAGGTTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.333 |
100 |
0.507 |
| pilA | Vibrio cholerae strain A1552 |
47.333 |
100 |
0.507 |
| pilA | Vibrio cholerae C6706 |
47.333 |
100 |
0.507 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.407 |
96.429 |
0.457 |
| pilA | Pseudomonas aeruginosa PAK |
43.537 |
100 |
0.457 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.928 |
98.571 |
0.443 |
| pilA | Acinetobacter baumannii strain A118 |
43.796 |
97.857 |
0.429 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.537 |
95.714 |
0.407 |