Detailed information NTG1049552

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEUKD_RS12265
• Genome accession: NZ_CP169050
• Coordinates: 2649940..2650809 (+)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain SF42
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2644940..2655809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEUKD_RS12245 (ACEUKD_12245)	nadC	2645361..2646248 (+)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACEUKD_RS12250 (ACEUKD_12250)	pilA	2646512..2646934 (+)	423	WP_256950981.1	pilin	Machinery gene
ACEUKD_RS12255 (ACEUKD_12255)	pilB	2646943..2648628 (+)	1686	WP_374092621.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACEUKD_RS12260 (ACEUKD_12260)	pilC	2648652..2649875 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
ACEUKD_RS12265 (ACEUKD_12265)	pilD	2649940..2650809 (+)	870	WP_012841418.1	A24 family peptidase	Machinery gene
ACEUKD_RS12270 (ACEUKD_12270)	coaE	2650810..2651424 (+)	615	WP_047008979.1	dephospho-CoA kinase	-
ACEUKD_RS12275 (ACEUKD_12275)	zapD	2651452..2652192 (+)	741	WP_012841416.1	cell division protein ZapD	-
ACEUKD_RS12280 (ACEUKD_12280)	yacG	2652351..2652545 (+)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
ACEUKD_RS12285 (ACEUKD_12285)	rplS	2653041..2653394 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACEUKD_RS12290 (ACEUKD_12290)	trmD	2653436..2654197 (-)	762	WP_005396693.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACEUKD_RS12295 (ACEUKD_12295)	rimM	2654225..2654773 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
ACEUKD_RS12300 (ACEUKD_12300)	rpsP	2654803..2655051 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=1049552 ACEUKD_RS12265 WP_012841418.1 2649940..2650809(+) (pilD) [Vibrio diabolicus strain SF42]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=1049552 ACEUKD_RS12265 WP_012841418.1 2649940..2650809(+) (pilD) [Vibrio diabolicus strain SF42]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTCGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464