Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACEO96_RS00180 Genome accession   NZ_CP168657
Coordinates   38716..39825 (+) Length   369 a.a.
NCBI ID   WP_017048702.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33716..44825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS00160 (ACEO96_00160) rsmB 34632..35912 (-) 1281 WP_047688083.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACEO96_RS00165 (ACEO96_00165) fmt 35972..36919 (-) 948 WP_094149589.1 methionyl-tRNA formyltransferase -
  ACEO96_RS00170 (ACEO96_00170) def 36936..37445 (-) 510 WP_038148727.1 peptide deformylase -
  ACEO96_RS00175 (ACEO96_00175) - 37586..38716 (+) 1131 WP_373433143.1 LysM peptidoglycan-binding domain-containing protein -
  ACEO96_RS00180 (ACEO96_00180) dprA 38716..39825 (+) 1110 WP_017048702.1 DNA-processing protein DprA Machinery gene
  ACEO96_RS00185 (ACEO96_00185) - 39828..40304 (+) 477 WP_094166129.1 DUF494 family protein -
  ACEO96_RS00190 (ACEO96_00190) - 40332..40904 (+) 573 WP_373433144.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ACEO96_RS00195 (ACEO96_00195) - 40977..42116 (-) 1140 WP_373433145.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACEO96_RS00200 (ACEO96_00200) purE 42121..42606 (-) 486 WP_010319910.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACEO96_RS00205 (ACEO96_00205) - 42807..43364 (+) 558 WP_017043689.1 L-threonylcarbamoyladenylate synthase -
  ACEO96_RS00210 (ACEO96_00210) hemF 43385..44299 (+) 915 WP_010319908.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39849.61 Da        Isoelectric Point: 6.7182

>NTDB_id=1044801 ACEO96_RS00180 WP_017048702.1 38716..39825(+) (dprA) [Vibrio anguillarum strain VA1]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQDQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIATAPPVLFVKGRITALSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSVQSDQQLPFAELLA
NVGVEATPVDILASRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1044801 ACEO96_RS00180 WP_017048702.1 38716..39825(+) (dprA) [Vibrio anguillarum strain VA1]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGTCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCCGCGTTGGGTCTAGTTCAAGATCAAATCC
GTTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCATATCCTT
ACTCCATTTTGCGATGGTTACCCTTCTTTACTAAAAGAAATTGCTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGCACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTCACCAGTGGTTTAGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGACCGGATAACTTTCCGC
GGCGAAATCGCATTATCAGCGGGTTAGCGGTTGGTGTTTTAGTGGTGGAAGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCGCGCTATGCTGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCCATTGCTAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATCGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCTGATTTATTTTCTGTACAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCCATATACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAACTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAGGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.208

99.187

0.637
  dprA Vibrio cholerae strain A1552

61.456

100

0.618
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.802

98.374

0.431
  dprA Neisseria meningitidis strain C311

37.975

100

0.407
  dprA Neisseria meningitidis MC58

37.975

100

0.407
  dprA Neisseria gonorrhoeae MS11

36.387

100

0.388
  dprA Acinetobacter baumannii D1279779

40.51

95.664

0.388
  dprA Neisseria gonorrhoeae strain FA1090

36.132

100

0.385
  dprA Acinetobacter baumannii strain A118

39.943

95.664

0.382
  dprA Acinetobacter baylyi ADP1

41.742

90.244

0.377
  dprA Haemophilus influenzae Rd KW20

50.365

74.255

0.374

Multiple sequence alignment