Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABQY66_RS07005 Genome accession   NZ_CP168199
Coordinates   1604582..1605016 (+) Length   144 a.a.
NCBI ID   WP_007973901.1    Uniprot ID   -
Organism   Xanthomonas citri strain WHRI 6104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1599582..1610016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY66_RS06980 (ABQY66_006985) - 1599589..1600767 (-) 1179 WP_223842576.1 DUF6531 domain-containing protein -
  ABQY66_RS06985 (ABQY66_006990) coaE 1600991..1601599 (-) 609 WP_022558665.1 dephospho-CoA kinase -
  ABQY66_RS06990 (ABQY66_006995) - 1601613..1602476 (-) 864 WP_022558666.1 A24 family peptidase -
  ABQY66_RS06995 (ABQY66_007000) pilC 1602483..1603739 (-) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  ABQY66_RS07000 (ABQY66_007005) pilE 1604066..1604506 (+) 441 WP_005934296.1 pilin Machinery gene
  ABQY66_RS07005 (ABQY66_007010) pilE 1604582..1605016 (+) 435 WP_007973901.1 pilin Machinery gene
  ABQY66_RS07010 (ABQY66_007015) pilB 1605079..1606815 (+) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQY66_RS07015 (ABQY66_007020) - 1606909..1607058 (+) 150 Protein_1365 serine/threonine protein kinase -
  ABQY66_RS07020 (ABQY66_007025) pilR 1607265..1608719 (-) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14995.27 Da        Isoelectric Point: 7.8193

>NTDB_id=1043042 ABQY66_RS07005 WP_007973901.1 1604582..1605016(+) (pilE) [Xanthomonas citri strain WHRI 6104]
MKARGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGNADTIKGR
YVSSVTVGADGVITVAFATLGANESIRGSQLQLVPDWSVAGSTVWRCDGAGTTLQAKYLPKACR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1043042 ABQY66_RS07005 WP_007973901.1 1604582..1605016(+) (pilE) [Xanthomonas citri strain WHRI 6104]
GTGAAAGCACGTGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTTGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCGCAGGTGGCAGAAGGGTTAAGTCTTGCCTCGGGTGCCAAGGTAGCAGTAGAGG
AGTTTCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAACGCTGATACCATTAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGCGCGGATGGCGTCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAACTGGTGCCTGACTGGTCTGTCGCAGGCTCGACAGTGTGGCGATGCGATGGGGCCGGCACGACGC
TGCAGGCAAAATATCTACCCAAAGCTTGCAGATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(34-144)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

44.586

100

0.486
  pilA Ralstonia pseudosolanacearum GMI1000

40.237

100

0.472
  pilE Neisseria gonorrhoeae MS11

43.038

100

0.472
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.638

100

0.465
  pilA2 Legionella pneumophila str. Paris

45.833

100

0.458
  pilA2 Legionella pneumophila strain ERS1305867

45.833

100

0.458
  comP Acinetobacter baylyi ADP1

40.909

100

0.437
  pilA/pilA1 Eikenella corrodens VA1

39.735

100

0.417
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.865

100

0.41
  pilA Pseudomonas aeruginosa PAK

35.22

100

0.389
  pilA Acinetobacter baumannii strain A118

36.879

97.917

0.361

Multiple sequence alignment