Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABQ014_RS16810 Genome accession   NZ_CP168178
Coordinates   3947459..3947887 (-) Length   142 a.a.
NCBI ID   WP_104551203.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. hederae strain WHRI 7733A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3942459..3952887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ014_RS16785 (ABQ014_016785) pilR 3942884..3944278 (+) 1395 WP_074058079.1 sigma-54 dependent transcriptional regulator Regulator
  ABQ014_RS16790 (ABQ014_016790) - 3944350..3944532 (+) 183 WP_104551199.1 YhfG family protein -
  ABQ014_RS16795 (ABQ014_016795) - 3944529..3945128 (+) 600 WP_104551200.1 Fic family protein -
  ABQ014_RS16800 (ABQ014_016800) pilB 3945171..3946907 (-) 1737 WP_104551201.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQ014_RS16805 (ABQ014_016805) - 3946949..3947362 (-) 414 WP_104551202.1 pilin -
  ABQ014_RS16810 (ABQ014_016810) comP 3947459..3947887 (-) 429 WP_104551203.1 pilin Machinery gene
  ABQ014_RS16815 (ABQ014_016815) pilC 3948233..3949492 (+) 1260 WP_104551204.1 type II secretion system F family protein Machinery gene
  ABQ014_RS16820 (ABQ014_016820) - 3949499..3950362 (+) 864 WP_002812278.1 A24 family peptidase -
  ABQ014_RS16825 (ABQ014_016825) coaE 3950376..3950999 (+) 624 WP_104551205.1 dephospho-CoA kinase -
  ABQ014_RS16830 (ABQ014_016830) - 3951531..3951932 (+) 402 WP_104551206.1 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14539.73 Da        Isoelectric Point: 8.4798

>NTDB_id=1042924 ABQ014_RS16810 WP_104551203.1 3947459..3947887(-) (comP) [Xanthomonas hortorum pv. hederae strain WHRI 7733A]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGAANSAVGTTWLCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1042924 ABQ014_RS16810 WP_104551203.1 3947459..3947887(-) (comP) [Xanthomonas hortorum pv. hederae strain WHRI 7733A]
ATGAAGAAGCAACAAGGCTTTACTTTGATCGAATTGATGATCGTGGTTGCGATCATTGCCATCCTGGCAGCCATTGCACT
CCCGGCGTATCAGGACTACACCATTCGCTCGCGAGTTTCGGAACTGGCTGTGATGGCTAGCTCCTTCAAGACGACCGTCG
CAGAAAATATTGCCAACAACGGTGGCACTTTGCCGGCTGATGCTTGCGTCGGTGTCGGTGCCACTGCAGCGACAACTAAT
ATGGCCTCGATCGCATGCACTCCTGCTACCGGTAATATCGTCGTTACTGGCGATGCGACTCGTACCAAGGGTACCGTCCT
GACTTATGCTCCCACCGTGGGCGCCGCCAATTCGGCGGTTGGCACTACTTGGCTCTGCACGGGAAGTGGCAGCCAGTCTA
AGTACTACCCGGCCGAGTGCCGTCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

54.61

99.296

0.542
  pilA2 Legionella pneumophila strain ERS1305867

53.901

99.296

0.535
  pilA Ralstonia pseudosolanacearum GMI1000

40.964

100

0.479
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

38.411

100

0.408
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.86

100

0.401
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.583

100

0.401
  pilA Haemophilus influenzae 86-028NP

38.235

95.775

0.366

Multiple sequence alignment