Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACDZ29_RS09325 Genome accession   NZ_CP168135
Coordinates   1820361..1820723 (-) Length   120 a.a.
NCBI ID   WP_370016851.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1815361..1825723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS09305 (ACDZ29_09220) - 1816139..1817755 (-) 1617 WP_289327029.1 ABC transporter substrate-binding protein -
  ACDZ29_RS09310 (ACDZ29_09225) - 1817797..1818765 (-) 969 WP_289314335.1 ABC transporter ATP-binding protein -
  ACDZ29_RS09315 (ACDZ29_09230) - 1818746..1819750 (-) 1005 WP_375090728.1 ABC transporter ATP-binding protein -
  ACDZ29_RS09320 (ACDZ29_09235) - 1820180..1820341 (-) 162 WP_375090729.1 hypothetical protein -
  ACDZ29_RS09325 (ACDZ29_09240) ssbB 1820361..1820723 (-) 363 WP_370016851.1 single-stranded DNA-binding protein Machinery gene
  ACDZ29_RS09330 (ACDZ29_09245) - 1821091..1821525 (+) 435 WP_289327033.1 YwpF family protein -
  ACDZ29_RS09335 (ACDZ29_09250) - 1821642..1821938 (-) 297 WP_370016852.1 hypothetical protein -
  ACDZ29_RS09340 (ACDZ29_09255) fabZ 1822243..1822671 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACDZ29_RS09345 (ACDZ29_09260) - 1822798..1823052 (-) 255 WP_230159095.1 DNA-directed RNA polymerase subunit beta -
  ACDZ29_RS09350 (ACDZ29_09265) - 1823206..1824054 (-) 849 WP_375090730.1 flagellar hook-basal body protein -
  ACDZ29_RS09355 (ACDZ29_09270) - 1824110..1824949 (-) 840 WP_375090731.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13651.63 Da        Isoelectric Point: 9.6119

>NTDB_id=1042463 ACDZ29_RS09325 WP_370016851.1 1820361..1820723(-) (ssbB) [Peribacillus sp. RS7]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGDYEADFVQCIIWKKSAENTAQYCKKGALIGITGRIKTR
RYENQEGKYVYVTEVVAERVQFIGSKQNDVKPKEIEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1042463 ACDZ29_RS09325 WP_370016851.1 1820361..1820723(-) (ssbB) [Peribacillus sp. RS7]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCCGAATTAAGATACACACCCGACGGCAAGGCTGTTTC
CAATATCACATTAGCAGTCAACCGGAACTTCCGTAATACTGTTGGTGACTATGAGGCGGACTTCGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAGTATTGTAAAAAAGGTGCCTTGATCGGTATCACAGGCAGAATAAAAACAAGG
AGATACGAAAATCAAGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATTGGATCTAAACA
AAATGATGTTAAGCCCAAGGAGATTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.404

95

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

88.333

0.508
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

88.333

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.34

88.333

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

44.34

88.333

0.392
  ssbA Streptococcus mutans UA159

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae D39

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae R6

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis SK321

43.396

88.333

0.383
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

87.5

0.367

Multiple sequence alignment