Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACCQ03_RS16345 | Genome accession | NZ_CP167847 |
| Coordinates | 3773167..3773595 (-) | Length | 142 a.a. |
| NCBI ID | WP_057677883.1 | Uniprot ID | A0A1V9HE72 |
| Organism | Xanthomonas sp. NCPPB 3569 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3768167..3778595
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCQ03_RS16325 (ACCQ03_16325) | pilR | 3769253..3770707 (+) | 1455 | WP_017155148.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ACCQ03_RS16330 (ACCQ03_16330) | - | 3770911..3771042 (-) | 132 | Protein_3195 | serine/threonine protein kinase | - |
| ACCQ03_RS16335 (ACCQ03_16335) | - | 3771119..3771238 (-) | 120 | WP_057687106.1 | hypothetical protein | - |
| ACCQ03_RS16340 (ACCQ03_16340) | pilB | 3771300..3773009 (-) | 1710 | WP_057677884.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCQ03_RS16345 (ACCQ03_16345) | pilA | 3773167..3773595 (-) | 429 | WP_057677883.1 | pilin | Machinery gene |
| ACCQ03_RS16350 (ACCQ03_16350) | pilC | 3773936..3775198 (+) | 1263 | WP_057677885.1 | type II secretion system F family protein | Machinery gene |
| ACCQ03_RS16355 (ACCQ03_16355) | - | 3775205..3776068 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| ACCQ03_RS16360 (ACCQ03_16360) | coaE | 3776082..3776690 (+) | 609 | WP_022558665.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14369.47 Da Isoelectric Point: 9.1206
>NTDB_id=1039817 ACCQ03_RS16345 WP_057677883.1 3773167..3773595(-) (pilA) [Xanthomonas sp. NCPPB 3569]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTPPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTPPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
Nucleotide
Download Length: 429 bp
>NTDB_id=1039817 ACCQ03_RS16345 WP_057677883.1 3773167..3773595(-) (pilA) [Xanthomonas sp. NCPPB 3569]
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCTGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCCCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTATCGTCCGGCTGAATGCCGCACCTAA
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCTGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCCCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTATCGTCCGGCTGAATGCCGCACCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.572 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
54.795 |
100 |
0.563 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.795 |
100 |
0.563 |
| comP | Acinetobacter baylyi ADP1 |
48.428 |
100 |
0.542 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.894 |
100 |
0.528 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.789 |
100 |
0.437 |
| pilE | Neisseria gonorrhoeae MS11 |
35.625 |
100 |
0.401 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.286 |
98.592 |
0.387 |
| pilA | Acinetobacter baumannii strain A118 |
39.007 |
99.296 |
0.387 |