Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACCQ03_RS16350 | Genome accession | NZ_CP167847 |
| Coordinates | 3773936..3775198 (+) | Length | 420 a.a. |
| NCBI ID | WP_057677885.1 | Uniprot ID | A0A1V9HE74 |
| Organism | Xanthomonas sp. NCPPB 3569 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3768936..3780198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCQ03_RS16325 (ACCQ03_16325) | pilR | 3769253..3770707 (+) | 1455 | WP_017155148.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ACCQ03_RS16330 (ACCQ03_16330) | - | 3770911..3771042 (-) | 132 | Protein_3195 | serine/threonine protein kinase | - |
| ACCQ03_RS16335 (ACCQ03_16335) | - | 3771119..3771238 (-) | 120 | WP_057687106.1 | hypothetical protein | - |
| ACCQ03_RS16340 (ACCQ03_16340) | pilB | 3771300..3773009 (-) | 1710 | WP_057677884.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCQ03_RS16345 (ACCQ03_16345) | pilA | 3773167..3773595 (-) | 429 | WP_057677883.1 | pilin | Machinery gene |
| ACCQ03_RS16350 (ACCQ03_16350) | pilC | 3773936..3775198 (+) | 1263 | WP_057677885.1 | type II secretion system F family protein | Machinery gene |
| ACCQ03_RS16355 (ACCQ03_16355) | - | 3775205..3776068 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| ACCQ03_RS16360 (ACCQ03_16360) | coaE | 3776082..3776690 (+) | 609 | WP_022558665.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46240.74 Da Isoelectric Point: 10.2689
>NTDB_id=1039818 ACCQ03_RS16350 WP_057677885.1 3773936..3775198(+) (pilC) [Xanthomonas sp. NCPPB 3569]
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=1039818 ACCQ03_RS16350 WP_057677885.1 3773936..3775198(+) (pilC) [Xanthomonas sp. NCPPB 3569]
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGTTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATTGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGCGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGACAGGCTGATATTGAGAGTACCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGCACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTAAACCTTTTTCC
ACACATGGTCATTCAAATGACCGCGATTGGCGAAGAAGCGGGCGCGCTAGACTCGATGCTTTTCAAGGTAGCGGAATACT
TCGAGCAGGAGGTTAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAACCAATGATTATGGTCTTCATTGGCGTTGTC
GTGGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGTTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATTGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGCGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGACAGGCTGATATTGAGAGTACCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGCACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTAAACCTTTTTCC
ACACATGGTCATTCAAATGACCGCGATTGGCGAAGAAGCGGGCGCGCTAGACTCGATGCTTTTCAAGGTAGCGGAATACT
TCGAGCAGGAGGTTAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAACCAATGATTATGGTCTTCATTGGCGTTGTC
GTGGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.408 |
94.524 |
0.514 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.383 |
95 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
51.741 |
95.714 |
0.495 |
| pilC | Acinetobacter baumannii D1279779 |
50.249 |
95.714 |
0.481 |
| pilG | Neisseria gonorrhoeae MS11 |
44.612 |
95 |
0.424 |
| pilG | Neisseria meningitidis 44/76-A |
44.11 |
95 |
0.419 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.238 |
0.395 |
| pilC | Vibrio campbellii strain DS40M4 |
39.409 |
96.667 |
0.381 |