Detailed information NTG1039658

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABQ266_RS16210
• Genome accession: NZ_CP167827
• Coordinates: 3721728..3722156 (-)
• Length: 142 a.a.
• NCBI ID: WP_011348339.1
• Uniprot ID: Q3BQ79
• Organism: Xanthomonas euvesicatoria strain WHRI 8301
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3720268..3721400	3721728..3722156	flank	328

Gene organization within MGE regions

Location: 3720268..3722156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQ266_RS16210 (ABQ266_016210)	pilA	3721728..3722156 (-)	429	WP_011348339.1	pilin	Machinery gene

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 14343.43 Da
• Isoelectric Point: 9.1206

>NTDB_id=1039658 ABQ266_RS16210 WP_011348339.1 3721728..3722156(-) (pilA) [Xanthomonas euvesicatoria strain WHRI 8301]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT

Nucleotide

• Length: 429 bp

>NTDB_id=1039658 ABQ266_RS16210 WP_011348339.1 3721728..3722156(-) (pilA) [Xanthomonas euvesicatoria strain WHRI 8301]
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (35-141)

3D structure

• AlphaFold DB: Q3BQ79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Ralstonia pseudosolanacearum GMI1000	51.572	100	0.577
pilA2	Legionella pneumophila str. Paris	54.795	100	0.563
pilA2	Legionella pneumophila strain ERS1305867	54.795	100	0.563
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	39.894	100	0.528
comP	Acinetobacter baylyi ADP1	47.468	100	0.528
pilA/pilAII	Pseudomonas stutzeri DSM 10701	41.096	100	0.423
pilA	Acinetobacter baumannii strain A118	39.716	99.296	0.394
pilA/pilAI	Pseudomonas stutzeri DSM 10701	38.571	98.592	0.38
pilA	Vibrio cholerae C6706	33.766	100	0.366
pilA	Vibrio cholerae strain A1552	33.766	100	0.366
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	33.766	100	0.366