Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABQ266_RS16210 | Genome accession | NZ_CP167827 |
| Coordinates | 3721728..3722156 (-) | Length | 142 a.a. |
| NCBI ID | WP_011348339.1 | Uniprot ID | Q3BQ79 |
| Organism | Xanthomonas euvesicatoria strain WHRI 8301 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3716728..3727156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABQ266_RS16195 (ABQ266_016195) | pilR | 3716962..3718416 (+) | 1455 | WP_011348337.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ABQ266_RS16200 (ABQ266_016200) | pilB | 3718631..3720238 (-) | 1608 | Protein_3163 | type IV-A pilus assembly ATPase PilB | - |
| ABQ266_RS16210 (ABQ266_016210) | pilA | 3721728..3722156 (-) | 429 | WP_011348339.1 | pilin | Machinery gene |
| ABQ266_RS16215 (ABQ266_016215) | pilC | 3722498..3723760 (+) | 1263 | WP_011348340.1 | type II secretion system F family protein | Machinery gene |
| ABQ266_RS16220 (ABQ266_016220) | - | 3723767..3724630 (+) | 864 | WP_008576868.1 | A24 family peptidase | - |
| ABQ266_RS16225 (ABQ266_016225) | coaE | 3724644..3725255 (+) | 612 | WP_011348341.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14343.43 Da Isoelectric Point: 9.1206
>NTDB_id=1039658 ABQ266_RS16210 WP_011348339.1 3721728..3722156(-) (pilA) [Xanthomonas euvesicatoria strain WHRI 8301]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
Nucleotide
Download Length: 429 bp
>NTDB_id=1039658 ABQ266_RS16210 WP_011348339.1 3721728..3722156(-) (pilA) [Xanthomonas euvesicatoria strain WHRI 8301]
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.572 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
54.795 |
100 |
0.563 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.795 |
100 |
0.563 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.894 |
100 |
0.528 |
| comP | Acinetobacter baylyi ADP1 |
47.468 |
100 |
0.528 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.096 |
100 |
0.423 |
| pilA | Acinetobacter baumannii strain A118 |
39.716 |
99.296 |
0.394 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.571 |
98.592 |
0.38 |
| pilA | Vibrio cholerae C6706 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae strain A1552 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
33.766 |
100 |
0.366 |