Detailed information NTG1039538

Bioinformatically predicted

Overview

• Name: pilE
• Type: Machinery gene
• Locus tag: ABQY16_RS16180
• Genome accession: NZ_CP167815
• Coordinates: 3757435..3757869 (-)
• Length: 144 a.a.
• NCBI ID: WP_007973901.1
• Uniprot ID: -
• Organism: Xanthomonas citri pv. fuscans strain WHRI 10261
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3757996..3758976	3757435..3757869	flank	127

Gene organization within MGE regions

Location: 3757435..3758976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQY16_RS16180 (ABQY16_016180)	pilE	3757435..3757869 (-)	435	WP_007973901.1	pilin	Machinery gene
ABQY16_RS16185 (ABQY16_016185)	-	3757996..3758976 (-)	981	WP_007975311.1	IS5-like element ISXfu2 family transposase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 14995.27 Da
• Isoelectric Point: 7.8193

>NTDB_id=1039538 ABQY16_RS16180 WP_007973901.1 3757435..3757869(-) (pilE) [Xanthomonas citri pv. fuscans strain WHRI 10261]
MKARGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGNADTIKGR
YVSSVTVGADGVITVAFATLGANESIRGSQLQLVPDWSVAGSTVWRCDGAGTTLQAKYLPKACR

Nucleotide

• Length: 435 bp

>NTDB_id=1039538 ABQY16_RS16180 WP_007973901.1 3757435..3757869(-) (pilE) [Xanthomonas citri pv. fuscans strain WHRI 10261]
GTGAAAGCACGTGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTTGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCGCAGGTGGCAGAAGGGTTAAGTCTTGCCTCGGGTGCCAAGGTAGCAGTAGAGG
AGTTTCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAACGCTGATACCATTAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGCGCGGATGGCGTCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAACTGGTGCCTGACTGGTCTGTCGCAGGCTCGACAGTGTGGCGATGCGATGGGGCCGGCACGACGC
TGCAGGCAAAATATCTACCCAAAGCTTGCAGATGA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (34-144)

• Prokaryotic N-terminal methylation motif (N_methyl) (2-26)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilE	Neisseria gonorrhoeae strain FA1090	44.586	100	0.486
pilA	Ralstonia pseudosolanacearum GMI1000	40.237	100	0.472
pilE	Neisseria gonorrhoeae MS11	43.038	100	0.472
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	35.638	100	0.465
pilA2	Legionella pneumophila str. Paris	45.833	100	0.458
pilA2	Legionella pneumophila strain ERS1305867	45.833	100	0.458
comP	Acinetobacter baylyi ADP1	40.909	100	0.437
pilA/pilA1	Eikenella corrodens VA1	39.735	100	0.417
pilA/pilAI	Pseudomonas stutzeri DSM 10701	39.865	100	0.41
pilA	Pseudomonas aeruginosa PAK	35.22	100	0.389
pilA	Acinetobacter baumannii strain A118	36.879	97.917	0.361