Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACBZ91_RS11240 Genome accession   NZ_CP167179
Coordinates   2402473..2404176 (-) Length   567 a.a.
NCBI ID   WP_372378691.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2397473..2409176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS11220 (ACBZ91_11220) - 2398179..2399018 (-) 840 WP_020334610.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  ACBZ91_RS11225 (ACBZ91_11225) - 2399088..2400581 (-) 1494 WP_329348498.1 AAA family ATPase -
  ACBZ91_RS11230 (ACBZ91_11230) aroB 2400634..2401734 (-) 1101 WP_014233146.1 3-dehydroquinate synthase -
  ACBZ91_RS11235 (ACBZ91_11235) aroK 2401766..2402284 (-) 519 WP_014233147.1 shikimate kinase AroK -
  ACBZ91_RS11240 (ACBZ91_11240) pilQ 2402473..2404176 (-) 1704 WP_372378691.1 type IV pilus secretin PilQ Machinery gene
  ACBZ91_RS11245 (ACBZ91_11245) pilP 2404244..2404759 (-) 516 WP_020334614.1 pilus assembly protein PilP Machinery gene
  ACBZ91_RS11250 (ACBZ91_11250) pilO 2404749..2405342 (-) 594 WP_372377396.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACBZ91_RS11255 (ACBZ91_11255) pilN 2405335..2405910 (-) 576 WP_243975175.1 PilN domain-containing protein Machinery gene
  ACBZ91_RS11260 (ACBZ91_11260) pilM 2405894..2406910 (-) 1017 WP_372377397.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 62038.65 Da        Isoelectric Point: 4.3040

>NTDB_id=1038693 ACBZ91_RS11240 WP_372378691.1 2402473..2404176(-) (pilQ) [Vibrio natriegens strain JSH01]
MLTGLLSFWLVLLFAPFALADGGMSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLLNTSVKDEQLYLL
DVKDFSTVVDSVEVFREVSTTRLVAHISDDYTHDYRLAGRYLEITVSKLKSDEKTPDKSILEKEGKLISINFQDIPVRNV
LQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLEKQQLEEEMGE
LSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVKQVQIEARIVTVS
EGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSIAFQVAKLGSDTL
LDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITPDNRLVLDLSVTQ
DRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYEKVGKSELLIFV
TPKVVIQ

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=1038693 ACBZ91_RS11240 WP_372378691.1 2402473..2404176(-) (pilQ) [Vibrio natriegens strain JSH01]
ATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTTGCCCCTTTTGCTTTGGCTGATGGCGGGATGTCTAATGC
GTTAAAGAGCATCGACTTTCGCACGAACAAGGACAAAGACGCGGTGATTGTGGTGGAACTGTCTTCACCGGCTGCGATTG
TCGATATTCAGCGGGTTCAGGAAGGACTGAGCATCGACTTGCTTAATACGTCAGTGAAAGATGAGCAGTTATATCTCCTC
GATGTAAAAGACTTTTCAACGGTAGTGGACAGCGTGGAAGTCTTTCGTGAAGTCTCGACGACCCGTTTAGTCGCGCATAT
TAGTGATGATTACACCCATGATTACCGTTTGGCAGGGCGCTATTTGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAA
AAACACCAGATAAGAGCATTTTAGAGAAAGAAGGCAAACTGATATCGATTAACTTCCAGGATATCCCGGTACGTAACGTC
TTACAGCTCATTGCCGACTATAACCAGTTTAACCTGGTGGTATCAGACTCGGTCGAAGGCAACCTGACACTGCGACTTGA
TGGTGTACCTTGGCAGCAGGTTTTGGACATTATTCTGCAAGTAAAAGGTTTGGATAAGCGAGTTGATGGTAATGTCATTC
TTGTCGCGCCGACCGATGAACTTGACCTTCGAGAGAAGCAGCAACTAGAGAAGCAGCAACTTGAAGAGGAAATGGGCGAA
CTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGATATTGCTGAGATGATTAATGGTGAAGGCAATATCAG
CATGCTCTCTGAGCGAGGCAGCATGACGATTGATGAGCGCACTAACTCACTATTGGTCAGAGAATTGCCAGAGAATATCT
TGGTTATTCGTGACATTATTGAGTCACTCGATATTCCGGTTAAGCAGGTCCAAATCGAAGCGAGGATTGTCACCGTCAGT
GAAGGGAACATGGATGAACTCGGCATTCGATGGGGATTCTCTTCCATCAACGGCAATAACACCGTTGGTGGCTCGATTGA
GAATAACCTCGCAACCATTGGCCTTTATGAAGGTGATGGTGAAGAGGGCGAGGGCGGCAGTGTTGGAATTGATGATTTTC
TTAACGTCAACCTGGCCGCTACTAACCCGAGCGCAACCAGCATTGCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTG
CTCGATCTGGAACTTTCTGCACTGCAGCAGGAGTCGAAAGCTGAGATCATCTCAAGCCCTCGTTTAATCACGACTAATAA
AAAACCTGCCTATATAGAACAAGGTACAGAAATTCCGTATCTAGAATCATCATCGAGTGGTGCGACAACCATTACGTTCA
AAAAAGCGGTGTTAAGTCTGAAAGTCACGCCACAAATTACCCCGGATAACCGTCTGGTGCTGGATTTAAGTGTTACTCAG
GACAGACCGGGGCAAGTGGTAAAAACGGGAACTGGCGAAGCGGTCACAATAGACACCCAGAGAATCGGGACTCAAGTCTT
AGTCAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAACACAGCATTACCAACTCTGTCGATAAAGTGCCATTAC
TCGGTGATCTGCCGTTATTAGGTGCTCTTTTCCGCAGAAGTTATGAAAAAGTTGGCAAAAGTGAACTGCTGATTTTCGTT
ACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(407-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

89.594

100

0.896
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.929

99.647

0.757
  pilQ Vibrio cholerae strain A1552

75.929

99.647

0.757
  pilQ Legionella pneumophila strain ERS1305867

41.273

97.002

0.4
  pilQ Legionella pneumophila strain Lp02

41.273

97.002

0.4
  pilQ Pseudomonas aeruginosa PAK

40.217

97.354

0.392
  pilQ Acinetobacter baumannii strain A118

37.819

100

0.392
  pilQ Acinetobacter baumannii D1279779

37.819

100

0.392
  comQ Acinetobacter baylyi ADP1

37.37

100

0.381

Multiple sequence alignment