Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACBZ91_RS11250 | Genome accession | NZ_CP167179 |
| Coordinates | 2404749..2405342 (-) | Length | 197 a.a. |
| NCBI ID | WP_372377396.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain JSH01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2399749..2410342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACBZ91_RS11230 (ACBZ91_11230) | aroB | 2400634..2401734 (-) | 1101 | WP_014233146.1 | 3-dehydroquinate synthase | - |
| ACBZ91_RS11235 (ACBZ91_11235) | aroK | 2401766..2402284 (-) | 519 | WP_014233147.1 | shikimate kinase AroK | - |
| ACBZ91_RS11240 (ACBZ91_11240) | pilQ | 2402473..2404176 (-) | 1704 | WP_372378691.1 | type IV pilus secretin PilQ | Machinery gene |
| ACBZ91_RS11245 (ACBZ91_11245) | pilP | 2404244..2404759 (-) | 516 | WP_020334614.1 | pilus assembly protein PilP | Machinery gene |
| ACBZ91_RS11250 (ACBZ91_11250) | pilO | 2404749..2405342 (-) | 594 | WP_372377396.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACBZ91_RS11255 (ACBZ91_11255) | pilN | 2405335..2405910 (-) | 576 | WP_243975175.1 | PilN domain-containing protein | Machinery gene |
| ACBZ91_RS11260 (ACBZ91_11260) | pilM | 2405894..2406910 (-) | 1017 | WP_372377397.1 | type IV pilus assembly protein PilM | Machinery gene |
| ACBZ91_RS11265 (ACBZ91_11265) | - | 2407054..2409621 (+) | 2568 | WP_372377398.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23170.63 Da Isoelectric Point: 4.7130
>NTDB_id=1038695 ACBZ91_RS11250 WP_372377396.1 2404749..2405342(-) (pilO) [Vibrio natriegens strain JSH01]
MVNWQDLEMDEIAEWPLIPQLLVISLFILLLQGFGYWFYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLIPQLLVISLFILLLQGFGYWFYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=1038695 ACBZ91_RS11250 WP_372377396.1 2404749..2405342(-) (pilO) [Vibrio natriegens strain JSH01]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
CATTCTTTTGCTCCAAGGTTTCGGCTATTGGTTCTACCTAGTGCCTAAGGAAGAGCGGTTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAAGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATTGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATTATC
ACTTTTCAAGATGTTACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCTCATACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
CATTCTTTTGCTCCAAGGTTTCGGCTATTGGTTCTACCTAGTGCCTAAGGAAGAGCGGTTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAAGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATTGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATTATC
ACTTTTCAAGATGTTACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCTCATACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
89.474 |
96.447 |
0.863 |
| pilO | Vibrio cholerae strain A1552 |
71.066 |
100 |
0.711 |