Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB8617_RS07320 Genome accession   NZ_CP166995
Coordinates   1559232..1560044 (+) Length   270 a.a.
NCBI ID   WP_409440251.1    Uniprot ID   -
Organism   Psychromonas sp. GE-S-Ul-11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1554232..1565044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8617_RS07300 (AB8617_07300) rsmB 1554940..1556238 (-) 1299 WP_409440249.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AB8617_RS07305 (AB8617_07305) fmt 1556244..1557197 (-) 954 WP_409440250.1 methionyl-tRNA formyltransferase -
  AB8617_RS07310 (AB8617_07310) def 1557227..1557739 (-) 513 WP_290041300.1 peptide deformylase -
  AB8617_RS07315 (AB8617_07315) - 1557834..1558910 (+) 1077 WP_290041298.1 LysM peptidoglycan-binding domain-containing protein -
  AB8617_RS07320 (AB8617_07320) dprA 1559232..1560044 (+) 813 WP_409440251.1 DNA-processing protein DprA Machinery gene
  AB8617_RS07325 (AB8617_07325) - 1560047..1560520 (+) 474 WP_290041295.1 DUF494 domain-containing protein -
  AB8617_RS07330 (AB8617_07330) - 1560521..1561075 (+) 555 WP_409440252.1 type I DNA topoisomerase -
  AB8617_RS07335 (AB8617_07335) - 1561130..1561699 (+) 570 WP_290041292.1 Sua5/YciO/YrdC/YwlC family protein -
  AB8617_RS07340 (AB8617_07340) purE 1561876..1562358 (+) 483 WP_290041291.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AB8617_RS07345 (AB8617_07345) - 1562360..1563508 (+) 1149 WP_290041290.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AB8617_RS07350 (AB8617_07350) - 1563564..1564577 (-) 1014 WP_409440253.1 class I SAM-dependent rRNA methyltransferase -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 28871.32 Da        Isoelectric Point: 8.2458

>NTDB_id=1036641 AB8617_RS07320 WP_409440251.1 1559232..1560044(+) (dprA) [Psychromonas sp. GE-S-Ul-11]
MKQISSGPLLLFVKGNIALLNAPQIAIVGSRSCTPYGQEKAHDLAQQLSNIGLTVTSGLAIGVDGMAHKGALKGLGSTIA
VLGTGLNNIYPKRHFELAQQVSEQGLLVSEFWPDTPAYPSNFPRRNRIISGLSLGTLVIEASVKSGSLITARYANEQNRE
VFALPGSIDNPQAYGCLKLIQQGAKLVLECNDIINEFPALQLPKITSNTVPPAVSKQSPLVALIDYNLTSFETLLARSGL
DVVSLQNQLIELEINGIITVQPQGYTKLKG

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1036641 AB8617_RS07320 WP_409440251.1 1559232..1560044(+) (dprA) [Psychromonas sp. GE-S-Ul-11]
TTGAAGCAAATTAGTAGTGGCCCTTTGTTGTTATTTGTTAAAGGGAATATCGCACTGCTTAATGCGCCACAAATCGCTAT
TGTGGGTAGCAGAAGCTGTACCCCCTATGGGCAGGAGAAAGCACACGATCTTGCACAGCAATTGTCTAACATTGGCTTAA
CAGTTACCAGTGGGTTAGCCATTGGTGTTGATGGTATGGCACATAAAGGCGCCTTAAAAGGTCTAGGCTCAACCATTGCT
GTTTTAGGTACTGGTTTAAATAACATTTACCCTAAACGACATTTTGAGCTCGCTCAACAAGTTAGTGAACAAGGTTTATT
AGTGTCGGAGTTTTGGCCTGATACCCCTGCTTATCCAAGTAACTTTCCTCGACGAAATCGCATTATTTCAGGGTTAAGCT
TAGGAACATTAGTGATTGAAGCCTCAGTAAAAAGTGGTTCGTTAATCACAGCACGTTATGCTAATGAACAAAACAGAGAA
GTTTTTGCATTACCAGGTTCAATAGATAATCCACAAGCTTACGGCTGCTTAAAATTAATCCAACAAGGAGCAAAATTAGT
CTTAGAGTGTAATGATATTATTAATGAGTTTCCGGCTTTACAGTTGCCAAAAATAACCAGTAATACAGTACCACCAGCAG
TAAGTAAGCAGTCACCTTTAGTGGCATTAATCGATTATAACCTAACCAGTTTTGAGACTTTGCTAGCACGAAGTGGATTA
GATGTGGTGAGCTTACAAAATCAGTTAATAGAATTAGAGATAAATGGTATAATTACCGTCCAACCGCAAGGTTATACTAA
GTTAAAAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(2-188)

DprA winged helix domain (DprA_WH)

(211-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.718

100

0.493
  dprA Legionella pneumophila strain ERS1305867

46.667

100

0.467
  dprA Vibrio cholerae strain A1552

44.056

100

0.467
  dprA Glaesserella parasuis strain SC1401

59.694

72.593

0.433
  dprA Haemophilus influenzae Rd KW20

57.949

72.222

0.419
  dprA Acinetobacter baylyi ADP1

40.942

100

0.419
  dprA Acinetobacter baumannii D1279779

40.072

100

0.411
  dprA Acinetobacter baumannii strain A118

40.072

100

0.411
  dprA Neisseria meningitidis MC58

53.846

72.222

0.389
  dprA Neisseria meningitidis strain C311

53.846

72.222

0.389
  dprA Neisseria gonorrhoeae MS11

52.308

72.222

0.378
  dprA Neisseria gonorrhoeae strain FA1090

51.795

72.222

0.374

Multiple sequence alignment