Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABKQ09_RS18070 Genome accession   NZ_CP166870
Coordinates   3601934..3602275 (-) Length   113 a.a.
NCBI ID   WP_003326616.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3596934..3607275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS18055 (ABKQ09_18050) - 3597185..3599959 (+) 2775 WP_268526962.1 DEAD/DEAH box helicase -
  ABKQ09_RS18060 (ABKQ09_18055) - 3600061..3600918 (-) 858 WP_219946737.1 Cof-type HAD-IIB family hydrolase -
  ABKQ09_RS18065 (ABKQ09_18060) - 3600938..3601702 (-) 765 WP_371176603.1 DeoR/GlpR family DNA-binding transcription regulator -
  ABKQ09_RS18070 (ABKQ09_18065) ssbB 3601934..3602275 (-) 342 WP_003326616.1 single-stranded DNA-binding protein SsbB Machinery gene
  ABKQ09_RS18075 (ABKQ09_18070) - 3602357..3602734 (-) 378 WP_328183261.1 hypothetical protein -
  ABKQ09_RS18080 (ABKQ09_18075) - 3602908..3603318 (+) 411 WP_326270995.1 YwpF-like family protein -
  ABKQ09_RS18085 (ABKQ09_18080) mscL 3603359..3603754 (-) 396 WP_003326612.1 large conductance mechanosensitive channel protein MscL -
  ABKQ09_RS18090 (ABKQ09_18085) fabZ 3603831..3604265 (-) 435 WP_013390676.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABKQ09_RS18095 (ABKQ09_18090) - 3604457..3605521 (+) 1065 WP_003326611.1 tetratricopeptide repeat protein -
  ABKQ09_RS18100 (ABKQ09_18095) - 3605548..3606372 (-) 825 WP_326270996.1 flagellar hook-basal body protein -
  ABKQ09_RS18105 (ABKQ09_18100) - 3606405..3607220 (-) 816 WP_003326609.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12484.21 Da        Isoelectric Point: 6.2904

>NTDB_id=1035787 ABKQ09_RS18070 WP_003326616.1 3601934..3602275(-) (ssbB) [Bacillus atrophaeus strain F4]
MFNQVMLVGRLTKDPELRYTSVGAAVANITIAVNRSFKNASGEIDADFVNCTLWRKTAENTAVYCQKGSLIGVSGRIQTR
SYENAEGAKVYVTEVMADSVRFMDPKPQELLTD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1035787 ABKQ09_RS18070 WP_003326616.1 3601934..3602275(-) (ssbB) [Bacillus atrophaeus strain F4]
ATGTTCAATCAGGTGATGCTTGTCGGACGTTTAACCAAAGACCCCGAGCTTCGCTATACTTCCGTGGGTGCAGCGGTAGC
CAATATTACGATTGCTGTTAATCGAAGCTTTAAGAATGCCTCGGGAGAAATTGATGCAGATTTTGTGAACTGTACGCTTT
GGAGAAAAACAGCTGAAAACACAGCGGTATATTGCCAAAAGGGTTCTCTCATCGGTGTCAGCGGAAGAATTCAGACGCGC
AGCTATGAAAATGCGGAAGGCGCAAAAGTATATGTGACCGAAGTGATGGCTGATTCTGTTCGTTTTATGGACCCTAAACC
CCAAGAGCTGCTGACTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

84.071

100

0.841
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.133

100

0.451
  ssbB/cilA Streptococcus mitis NCTC 12261

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae Rx1

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae D39

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae R6

46.296

95.575

0.442
  ssbB/cilA Streptococcus mitis SK321

46.296

95.575

0.442
  ssbA Streptococcus mutans UA159

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398

Multiple sequence alignment