Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QUF19_RS16865 Genome accession   NZ_AP028067
Coordinates   3746159..3747271 (-) Length   370 a.a.
NCBI ID   WP_286295179.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3741159..3752271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS16835 hemF 3741696..3742613 (-) 918 WP_286295151.1 oxygen-dependent coproporphyrinogen oxidase -
  QUF19_RS16840 - 3742633..3743190 (-) 558 WP_029223376.1 L-threonylcarbamoyladenylate synthase -
  QUF19_RS16845 purE 3743386..3743871 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QUF19_RS16850 - 3743877..3745007 (+) 1131 WP_286295168.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QUF19_RS16855 - 3745097..3745666 (-) 570 WP_017069578.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QUF19_RS16860 - 3745679..3746155 (-) 477 WP_009848094.1 DUF494 family protein -
  QUF19_RS16865 dprA 3746159..3747271 (-) 1113 WP_286295179.1 DNA-processing protein DprA Machinery gene
  QUF19_RS16870 - 3747268..3748359 (-) 1092 WP_286295181.1 LysM peptidoglycan-binding domain-containing protein -
  QUF19_RS16875 def 3748500..3749012 (+) 513 WP_004735769.1 peptide deformylase -
  QUF19_RS16880 fmt 3749051..3750016 (+) 966 WP_286295182.1 methionyl-tRNA formyltransferase -
  QUF19_RS16885 rsmB 3750137..3751417 (+) 1281 WP_017099685.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40155.87 Da        Isoelectric Point: 6.7744

>NTDB_id=103540 QUF19_RS16865 WP_286295179.1 3746159..3747271(-) (dprA) [Vibrio sp. FE10]
MNEQQLSAWLTLSFVPQLGGKRLARLLSIDSPSNIVGYSSHQLQAIGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNEIASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLAERICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQNAQDVLIEIRSLLDWSIDQQPSLFEPTPNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=103540 QUF19_RS16865 WP_286295179.1 3746159..3747271(-) (dprA) [Vibrio sp. FE10]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTCTAAGTTTTGTTCCGCAACTGGGTGGCAAGCGCCTTGCTCGTTTGCT
GAGTATTGATTCTCCTTCTAATATTGTTGGCTACTCAAGTCATCAGCTGCAAGCGATTGGCTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGATCGCCTCTGCACCAAGTGTTCTTTTCGTTAAAGGTCACGT
TGAAAAGCTGATCGAGCCTCAAATCGCGATGGTCGGCAGTCGCAATGCCAGTATTGAAGGGCTACAGACAGCGAAGTCCT
TTGCCAAAGAGTTTGTGCAAAATGGCTTGATCGTCACGAGTGGATTAGCGTTGGGCATTGACGGCTATGCTCATGATGGT
GCTTTGGATAAAGGAGGGGAGACTTTCGCGGTGCTGGGCTCTGGTTTAGATTCCATTTATCCTGCGCGGCACAGAAACCT
AGCGGAGAGGATCTGTGAGAATGGGGCACTGATTTCAGAGTTTCGTCCAAGCGCAAAACCAAGACCTGAACATTTCCCTA
GACGTAACCGTATTATAAGTGGATTGTCGCTCGGAACCTTGGTGGTTGAAGCTGCTGAGAAAAGTGGCTCTTTGATTACG
GCTCGCTATGCCATGGAGCAAGGTCGAGAGGTGTTTGCGCTGCCCGGTTCAATTCATAGCCCAACCAGTCGCGGAGGTAA
CAGCTTAATTAAAGCTGGAGCATGTTTAGTACAAAATGCTCAAGATGTTCTGATTGAAATAAGGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAGCCTACGCCGAATGAGGGTGAAAATGAGCAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

57.754

100

0.584
  dprA Glaesserella parasuis strain SC1401

48.118

100

0.484
  dprA Neisseria meningitidis MC58

38.539

100

0.414
  dprA Neisseria meningitidis strain C311

38.539

100

0.414
  dprA Legionella pneumophila strain ERS1305867

45.732

88.649

0.405
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Haemophilus influenzae Rd KW20

44.214

91.081

0.403
  dprA Acinetobacter baumannii D1279779

41.642

92.162

0.384
  dprA Acinetobacter baumannii strain A118

40.988

92.973

0.381
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362

Multiple sequence alignment