Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QUF19_RS14230 | Genome accession | NZ_AP028067 |
| Coordinates | 3221681..3222106 (+) | Length | 141 a.a. |
| NCBI ID | WP_286294725.1 | Uniprot ID | - |
| Organism | Vibrio sp. FE10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3216681..3227106
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUF19_RS14215 | pdhR | 3218606..3219367 (-) | 762 | WP_009847596.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| QUF19_RS14220 | ampD | 3219851..3220399 (-) | 549 | WP_286294724.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QUF19_RS14225 | nadC | 3220535..3221425 (+) | 891 | WP_102437684.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QUF19_RS14230 | pilA | 3221681..3222106 (+) | 426 | WP_286294725.1 | pilin | Machinery gene |
| QUF19_RS14235 | pilB | 3222107..3223792 (+) | 1686 | WP_286294726.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QUF19_RS14240 | pilC | 3223807..3225036 (+) | 1230 | WP_286294727.1 | type II secretion system F family protein | Machinery gene |
| QUF19_RS14245 | pilD | 3225105..3225974 (+) | 870 | WP_286294728.1 | A24 family peptidase | Machinery gene |
| QUF19_RS14250 | coaE | 3225977..3226591 (+) | 615 | WP_286294730.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14710.87 Da Isoelectric Point: 7.7745
>NTDB_id=103521 QUF19_RS14230 WP_286294725.1 3221681..3222106(+) (pilA) [Vibrio sp. FE10]
MNNKNRRTNQKGFTLIELMIVVAIIGALSAIAIPAYKDYVAKSEVAAAVATMKALLTPAELTYQEKGKLAANTDLGDLGI
SAGSNVLGTISVPTDNDIKFLFGSKSAISNAYITYSRTDTGWTCAVVSGGVSSLPTIDSCS
MNNKNRRTNQKGFTLIELMIVVAIIGALSAIAIPAYKDYVAKSEVAAAVATMKALLTPAELTYQEKGKLAANTDLGDLGI
SAGSNVLGTISVPTDNDIKFLFGSKSAISNAYITYSRTDTGWTCAVVSGGVSSLPTIDSCS
Nucleotide
Download Length: 426 bp
>NTDB_id=103521 QUF19_RS14230 WP_286294725.1 3221681..3222106(+) (pilA) [Vibrio sp. FE10]
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTGGTAGCGATTATTGGCGC
TCTATCAGCGATCGCGATACCCGCATACAAAGATTACGTAGCAAAAAGTGAAGTTGCAGCAGCAGTAGCAACTATGAAAG
CTTTACTCACGCCGGCAGAACTAACCTATCAAGAAAAAGGGAAATTAGCAGCTAACACTGATTTAGGTGACTTGGGCATC
TCCGCAGGTTCTAATGTATTAGGAACTATTAGTGTACCAACCGACAACGATATTAAATTCCTGTTCGGATCAAAAAGTGC
GATATCCAACGCCTACATCACATACTCTAGAACCGACACTGGCTGGACATGTGCTGTAGTCTCAGGTGGCGTAAGTAGCT
TACCAACCATTGATAGTTGCTCATAA
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTGGTAGCGATTATTGGCGC
TCTATCAGCGATCGCGATACCCGCATACAAAGATTACGTAGCAAAAAGTGAAGTTGCAGCAGCAGTAGCAACTATGAAAG
CTTTACTCACGCCGGCAGAACTAACCTATCAAGAAAAAGGGAAATTAGCAGCTAACACTGATTTAGGTGACTTGGGCATC
TCCGCAGGTTCTAATGTATTAGGAACTATTAGTGTACCAACCGACAACGATATTAAATTCCTGTTCGGATCAAAAAGTGC
GATATCCAACGCCTACATCACATACTCTAGAACCGACACTGGCTGGACATGTGCTGTAGTCTCAGGTGGCGTAAGTAGCT
TACCAACCATTGATAGTTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
46.358 |
100 |
0.496 |
| pilA | Pseudomonas aeruginosa PAK |
43.939 |
93.617 |
0.411 |
| pilA | Acinetobacter baumannii strain A118 |
41.481 |
95.745 |
0.397 |
| pilA | Vibrio cholerae C6706 |
40.146 |
97.163 |
0.39 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.146 |
97.163 |
0.39 |
| pilA | Vibrio cholerae strain A1552 |
40.146 |
97.163 |
0.39 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.8 |
88.652 |
0.362 |