Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QUF19_RS14240 Genome accession   NZ_AP028067
Coordinates   3223807..3225036 (+) Length   409 a.a.
NCBI ID   WP_286294727.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3218807..3230036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS14220 ampD 3219851..3220399 (-) 549 WP_286294724.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QUF19_RS14225 nadC 3220535..3221425 (+) 891 WP_102437684.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QUF19_RS14230 pilA 3221681..3222106 (+) 426 WP_286294725.1 pilin Machinery gene
  QUF19_RS14235 pilB 3222107..3223792 (+) 1686 WP_286294726.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUF19_RS14240 pilC 3223807..3225036 (+) 1230 WP_286294727.1 type II secretion system F family protein Machinery gene
  QUF19_RS14245 pilD 3225105..3225974 (+) 870 WP_286294728.1 A24 family peptidase Machinery gene
  QUF19_RS14250 coaE 3225977..3226591 (+) 615 WP_286294730.1 dephospho-CoA kinase -
  QUF19_RS14255 zapD 3226618..3227358 (+) 741 WP_017108712.1 cell division protein ZapD -
  QUF19_RS14260 yacG 3227440..3227637 (+) 198 WP_017056605.1 DNA gyrase inhibitor YacG -
  QUF19_RS14265 rplS 3228152..3228505 (-) 354 WP_009847607.1 50S ribosomal protein L19 -
  QUF19_RS14270 trmD 3228565..3229305 (-) 741 WP_065110800.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QUF19_RS14275 rimM 3229332..3229886 (-) 555 WP_009847609.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45318.28 Da        Isoelectric Point: 10.2353

>NTDB_id=103523 QUF19_RS14240 WP_286294727.1 3223807..3225036(+) (pilC) [Vibrio sp. FE10]
MSSKTKQSQLKNYHWKGINSSGKKVSGQTLALTELEVREKLKDQHIQIKKIKKKSISALTRLTHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYTAIGIGLLIL
SVQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=103523 QUF19_RS14240 WP_286294727.1 3223807..3225036(+) (pilC) [Vibrio sp. FE10]
ATGAGTAGTAAAACCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATAAACAGCTCCGGAAAGAAAGTATCAGG
GCAAACCTTGGCATTGACGGAATTAGAGGTGCGAGAAAAGCTCAAAGACCAGCATATCCAAATTAAGAAAATCAAAAAGA
AGAGCATCTCAGCACTGACTCGTTTAACACACCGAGTTAAGGCCAAAGACATCACAGTACTAACTCGGCAACTCGCAACG
ATGTTAGCAACGGGTGTTCCTATCGTGCAGGCCATCAAGTTAGTCTCAGACAACCATCGCAAAGCTGAAATGAAGTCTAT
CTTGTCGCATATCTGTAAAGGCGTAGAAGCAGGCACTCCGATTTCAAAAGCCATGCGCACCGCAAGCCGTCACTTTGATG
ATCTGTATACCGACTTAGTTGCGACAGGAGAACTCTCAGGAAACCTAGCGCAAGTCTTTGAACGTTTGGCGACATACCGT
GAAAAAAGTGAGCAACTAAAATCTAAAGTTATAAAGGCTCTCATCTACCCAGCAATGGTTGTTGCGGTCGCCCTTACCGT
TTCCTACTTAATGCTAACCATGGTCATCCCGGAGTTTGAATCGATGTTTTCTGGTTTTGGAGCAGACTTACCTTGGTTCA
CTCAGCAAGTGCTTTATCTTTCCCACTGGATGCAGGCCTACAGTTTCTATACTGCTATTGGTATTGGTTTATTAATTCTG
TCCGTTCAGCAACTGCGTCAGCGATCTTACTCGATTCGACTTTCAACCAGTCGTCTTGGTTTACGCTTTCCTATCTTAGG
TGCTGTCATCACTAAGGCATCAATTGCCAAGTTCAGTCGGACGCTATCAACCAGTTTTAGTTCCGGGATTCCCATCTTAA
CAAGCCTGAAAACAACGGCTAAAACGGCGGGTAATCTGCATTATGAATCGGCAATCATCGAGGTTCACCGTGAGACTGCC
GCAGGCATGCCGATGTACATTGCAATGCGCAATACCAACGCCTTCCCAGAGATGGTTTTGCAGATGGTGATGATTGGTGA
AGAGTCAGGAAACCTTGATGATATGCTCAATAAAGTCGCTTCCATTTACGAGTTTGAAGTAGACAACACCGTCGATAACC
TAGGTAAAATTCTCGAACCGCTGATTATTGTCTTTTTGGGTACCGTTGTTGGTGGGCTTGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.494

99.022

0.797
  pilC Vibrio campbellii strain DS40M4

74.138

99.267

0.736
  pilC Acinetobacter baylyi ADP1

42.054

100

0.421
  pilC Acinetobacter baumannii D1279779

42.327

98.778

0.418
  pilC Legionella pneumophila strain ERS1305867

41.855

97.555

0.408
  pilG Neisseria gonorrhoeae MS11

41.103

97.555

0.401
  pilC Pseudomonas stutzeri DSM 10701

40.347

98.778

0.399
  pilG Neisseria meningitidis 44/76-A

40.852

97.555

0.399

Multiple sequence alignment