Detailed information NTG0103524

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QUF19_RS14245
• Genome accession: NZ_AP028067
• Coordinates: 3225105..3225974 (+)
• Length: 289 a.a.
• NCBI ID: WP_286294728.1
• Uniprot ID: -
• Organism: Vibrio sp. FE10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3220105..3230974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUF19_RS14225	nadC	3220535..3221425 (+)	891	WP_102437684.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QUF19_RS14230	pilA	3221681..3222106 (+)	426	WP_286294725.1	pilin	Machinery gene
QUF19_RS14235	pilB	3222107..3223792 (+)	1686	WP_286294726.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QUF19_RS14240	pilC	3223807..3225036 (+)	1230	WP_286294727.1	type II secretion system F family protein	Machinery gene
QUF19_RS14245	pilD	3225105..3225974 (+)	870	WP_286294728.1	A24 family peptidase	Machinery gene
QUF19_RS14250	coaE	3225977..3226591 (+)	615	WP_286294730.1	dephospho-CoA kinase	-
QUF19_RS14255	zapD	3226618..3227358 (+)	741	WP_017108712.1	cell division protein ZapD	-
QUF19_RS14260	yacG	3227440..3227637 (+)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
QUF19_RS14265	rplS	3228152..3228505 (-)	354	WP_009847607.1	50S ribosomal protein L19	-
QUF19_RS14270	trmD	3228565..3229305 (-)	741	WP_065110800.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QUF19_RS14275	rimM	3229332..3229886 (-)	555	WP_009847609.1	ribosome maturation factor RimM	-
QUF19_RS14280	rpsP	3229913..3230161 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32583.71 Da
• Isoelectric Point: 6.9287

>NTDB_id=103524 QUF19_RS14245 WP_286294728.1 3225105..3225974(+) (pilD) [Vibrio sp. FE10]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCQTQLRVI
DNIPVLSWLFLKGKCHSCDNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNVSPVSLQDSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLLWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=103524 QUF19_RS14245 WP_286294728.1 3225105..3225974(+) (pilD) [Vibrio sp. FE10]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGTTTTCTCAA
CGTCGTCATACACCGTTTACCGATTATGATGGAACGAGAATGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGCCCAAAATGCCAAACCCAATTAAGGGTAATC
GACAATATTCCTGTATTAAGCTGGCTGTTCTTAAAAGGCAAATGCCATAGCTGTGATAATCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACCGCAATCCTTTGTACCGTAGTCGCTAGTCATTTTGGTTTCAGTTACTACGCCATCGCCCTGA
TCTTTTTCACCTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACCATGCTGCTGCCAGATCAAATTACTCTACCT
TTAGTTTGGTCTGGTATTGCTTTAGCTCTGTTTAACGTCAGCCCAGTATCGCTTCAAGATTCAGTGATTGGTGCAATGGC
TGGCTACCTAGCCCTATGGTCCGTTTATTGGCTGTTCAAGCTACTAACGGGCAAAGAAGGCATGGGTTACGGCGACTTCA
AGCTTTTGGCTGCGCTTGGCGCATGGCTTGGCTGGCAGCACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGTTTG
GTTTTCGGCTTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTCCCATTTGGTCCTTACCTAGCGATTGC
TGGTTGGGTAAGCCTATTGTGGGGCAATGACATCATGGGTTGGTATTTCACTTCTGTGCTAGGGATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	70.486	99.654	0.702
pilD	Acinetobacter baumannii D1279779	51.311	92.388	0.474
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436