Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AB8O67_RS19365 Genome accession   NZ_CP166053
Coordinates   3731458..3731799 (-) Length   113 a.a.
NCBI ID   WP_044159651.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3726458..3736799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS19350 (AB8O67_19345) - 3726695..3729469 (+) 2775 WP_369888352.1 DEAD/DEAH box helicase -
  AB8O67_RS19355 (AB8O67_19350) - 3729592..3730449 (-) 858 WP_369888353.1 Cof-type HAD-IIB family hydrolase -
  AB8O67_RS19360 (AB8O67_19355) - 3730455..3731231 (-) 777 WP_369888625.1 DeoR/GlpR family DNA-binding transcription regulator -
  AB8O67_RS19365 (AB8O67_19360) ssbB 3731458..3731799 (-) 342 WP_044159651.1 single-stranded DNA-binding protein SsbB Machinery gene
  AB8O67_RS19370 (AB8O67_19365) - 3731877..3732260 (-) 384 WP_044159653.1 hypothetical protein -
  AB8O67_RS19375 (AB8O67_19370) - 3732436..3732846 (+) 411 WP_044159655.1 YwpF-like family protein -
  AB8O67_RS19380 (AB8O67_19375) blaOXA 3732900..3733703 (+) 804 WP_106295320.1 class D beta-lactamase -
  AB8O67_RS19385 (AB8O67_19380) mscL 3733736..3734128 (-) 393 WP_044159658.1 large conductance mechanosensitive channel protein MscL -
  AB8O67_RS19390 (AB8O67_19385) fabZ 3734201..3734626 (-) 426 WP_024123116.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB8O67_RS19395 (AB8O67_19390) - 3734820..3735884 (+) 1065 WP_044159660.1 tetratricopeptide repeat protein -
  AB8O67_RS19400 (AB8O67_19395) - 3735906..3736715 (-) 810 WP_202646678.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12552.29 Da        Isoelectric Point: 8.4667

>NTDB_id=1033232 AB8O67_RS19365 WP_044159651.1 3731458..3731799(-) (ssbB) [Bacillus halotolerans strain XYK2-4]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEVEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1033232 AB8O67_RS19365 WP_044159651.1 3731458..3731799(-) (ssbB) [Bacillus halotolerans strain XYK2-4]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCGGGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAGTTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

93.805

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40

92.92

0.372

Multiple sequence alignment