Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8E30_RS13910 Genome accession   NZ_CP165965
Coordinates   2629447..2629785 (-) Length   112 a.a.
NCBI ID   WP_369899892.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2624447..2634785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS13885 (AB8E30_13895) - 2624901..2625335 (-) 435 WP_369899887.1 BrxA/BrxB family bacilliredoxin -
  AB8E30_RS13890 (AB8E30_13900) - 2625419..2625802 (-) 384 WP_369899888.1 thiol-disulfide oxidoreductase DCC family protein -
  AB8E30_RS13895 (AB8E30_13905) - 2625806..2626933 (-) 1128 WP_369899889.1 conserved virulence factor C family protein -
  AB8E30_RS13900 (AB8E30_13910) - 2627624..2628757 (+) 1134 WP_369899890.1 FAD-dependent oxidoreductase -
  AB8E30_RS13905 (AB8E30_13915) - 2628786..2629376 (+) 591 WP_369899891.1 TetR/AcrR family transcriptional regulator -
  AB8E30_RS13910 (AB8E30_13920) ssb 2629447..2629785 (-) 339 WP_369899892.1 single-stranded DNA-binding protein Machinery gene
  AB8E30_RS13915 (AB8E30_13925) - 2629944..2630675 (-) 732 WP_369899893.1 Bax inhibitor-1/YccA family protein -
  AB8E30_RS13920 (AB8E30_13930) - 2630752..2632644 (-) 1893 WP_369899894.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB8E30_RS13925 (AB8E30_13935) - 2632641..2633288 (-) 648 WP_369899895.1 HD domain-containing protein -
  AB8E30_RS13930 (AB8E30_13940) - 2633396..2633755 (+) 360 Protein_2709 hypothetical protein -
  AB8E30_RS13935 (AB8E30_13945) - 2633821..2634633 (+) 813 Protein_2710 HNH endonuclease signature motif containing protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12906.93 Da        Isoelectric Point: 9.8776

>NTDB_id=1032643 AB8E30_RS13910 WP_369899892.1 2629447..2629785(-) (ssb) [Bacillus manliponensis strain jeju3-1]
MMNRVVLIGRLTKDPELYYTKQGIAYARLCVAVNRGFRNSLGEQQADFIHCIIWRKSAENVTLYCKKGSLVGVTGHIHTS
HYDNEMGKRVYKTEVVIERITFLERKREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1032643 AB8E30_RS13910 WP_369899892.1 2629447..2629785(-) (ssb) [Bacillus manliponensis strain jeju3-1]
ATGATGAATCGTGTTGTCTTAATTGGTAGATTAACGAAAGATCCAGAACTGTACTATACGAAACAAGGCATTGCATACGC
TCGTTTATGTGTGGCGGTAAATAGAGGGTTTCGAAATAGTTTAGGAGAGCAACAAGCTGATTTTATTCATTGCATCATTT
GGCGAAAGTCCGCAGAAAATGTAACGTTGTACTGTAAAAAAGGATCTCTTGTTGGGGTAACAGGACATATTCATACGAGT
CACTATGATAATGAGATGGGAAAAAGAGTGTATAAGACGGAAGTTGTCATTGAGAGAATTACGTTTTTGGAGAGGAAGAG
AGAAGGAGCTTCACAGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.562
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.982

100

0.545
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.909

98.214

0.402
  ssbB Lactococcus lactis subsp. cremoris KW2

47.368

84.821

0.402
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.091

98.214

0.384
  ssbB/cilA Streptococcus mitis NCTC 12261

39.091

98.214

0.384
  ssbB/cilA Streptococcus pneumoniae Rx1

38.182

98.214

0.375
  ssbB/cilA Streptococcus pneumoniae D39

38.182

98.214

0.375
  ssbB/cilA Streptococcus pneumoniae R6

38.182

98.214

0.375
  ssbB/cilA Streptococcus mitis SK321

38.182

98.214

0.375
  ssbA Streptococcus mutans UA159

37.273

98.214

0.366

Multiple sequence alignment