Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6M99_RS06245 Genome accession   NZ_CP163513
Coordinates   1320584..1320979 (-) Length   131 a.a.
NCBI ID   WP_369350423.1    Uniprot ID   -
Organism   Streptococcus hillyeri strain S23-3001-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1292722..1331584 1320584..1320979 within 0


Gene organization within MGE regions


Location: 1292722..1331584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M99_RS06040 (AB6M99_06040) - 1292722..1293453 (-) 732 Protein_1179 CHAP domain-containing protein -
  AB6M99_RS06045 (AB6M99_06045) - 1293581..1293808 (-) 228 WP_369350377.1 phage holin -
  AB6M99_RS06050 (AB6M99_06050) - 1293805..1294110 (-) 306 WP_369350379.1 hypothetical protein -
  AB6M99_RS06055 (AB6M99_06055) - 1294114..1294254 (-) 141 WP_183121663.1 hypothetical protein -
  AB6M99_RS06060 (AB6M99_06060) - 1294286..1294741 (-) 456 WP_369350381.1 hypothetical protein -
  AB6M99_RS06065 (AB6M99_06065) - 1294738..1294923 (-) 186 WP_369350383.1 hypothetical protein -
  AB6M99_RS06070 (AB6M99_06070) - 1294933..1298985 (-) 4053 WP_369350385.1 phage tail spike protein -
  AB6M99_RS06075 (AB6M99_06075) - 1299007..1299768 (-) 762 WP_369350388.1 hypothetical protein -
  AB6M99_RS06080 (AB6M99_06080) - 1299771..1301759 (-) 1989 WP_369350389.1 phage tail tape measure protein -
  AB6M99_RS06085 (AB6M99_06085) - 1301786..1302946 (-) 1161 WP_121836465.1 ISAs1 family transposase -
  AB6M99_RS06090 (AB6M99_06090) - 1302980..1303486 (-) 507 WP_369350390.1 phage tail tape measure protein -
  AB6M99_RS06095 (AB6M99_06095) - 1303487..1304098 (-) 612 WP_369350391.1 Gp15 family bacteriophage protein -
  AB6M99_RS06100 (AB6M99_06100) - 1304106..1304516 (-) 411 WP_369350392.1 hypothetical protein -
  AB6M99_RS06105 (AB6M99_06105) - 1304532..1305032 (-) 501 WP_369350393.1 phage tail tube protein -
  AB6M99_RS06110 (AB6M99_06110) - 1305036..1305404 (-) 369 WP_369350394.1 hypothetical protein -
  AB6M99_RS06115 (AB6M99_06115) - 1305407..1305760 (-) 354 WP_369350395.1 minor capsid protein -
  AB6M99_RS06120 (AB6M99_06120) - 1305757..1306101 (-) 345 WP_369350396.1 putative minor capsid protein -
  AB6M99_RS06125 (AB6M99_06125) - 1306095..1306481 (-) 387 WP_369350397.1 hypothetical protein -
  AB6M99_RS06130 (AB6M99_06130) - 1306484..1306735 (-) 252 WP_369350399.1 hypothetical protein -
  AB6M99_RS06135 (AB6M99_06135) - 1306749..1307621 (-) 873 WP_369350400.1 hypothetical protein -
  AB6M99_RS06140 (AB6M99_06140) - 1307635..1308225 (-) 591 WP_369350401.1 hypothetical protein -
  AB6M99_RS06145 (AB6M99_06145) - 1308225..1308446 (-) 222 WP_369350402.1 hypothetical protein -
  AB6M99_RS06150 (AB6M99_06150) - 1308536..1308748 (-) 213 WP_369350403.1 hypothetical protein -
  AB6M99_RS06155 (AB6M99_06155) - 1308760..1309011 (-) 252 WP_369350404.1 DUF6275 family protein -
  AB6M99_RS06160 (AB6M99_06160) - 1309022..1309297 (-) 276 WP_369350405.1 hypothetical protein -
  AB6M99_RS06165 (AB6M99_06165) - 1309475..1309696 (-) 222 WP_369350406.1 CPCC family cysteine-rich protein -
  AB6M99_RS06170 (AB6M99_06170) - 1309662..1311272 (-) 1611 WP_369350407.1 phage minor capsid protein -
  AB6M99_RS06175 (AB6M99_06175) - 1311272..1312771 (-) 1500 WP_369350409.1 phage portal protein -
  AB6M99_RS06180 (AB6M99_06180) - 1312781..1314070 (-) 1290 WP_369350410.1 PBSX family phage terminase large subunit -
  AB6M99_RS06185 (AB6M99_06185) terS 1314073..1314771 (-) 699 WP_369350411.1 phage terminase small subunit -
  AB6M99_RS06190 (AB6M99_06190) - 1314896..1315330 (-) 435 WP_369350412.1 DUF1492 domain-containing protein -
  AB6M99_RS06195 (AB6M99_06195) - 1315717..1315932 (-) 216 WP_369350413.1 hypothetical protein -
  AB6M99_RS06200 (AB6M99_06200) - 1315942..1316151 (-) 210 WP_369350414.1 hypothetical protein -
  AB6M99_RS06205 (AB6M99_06205) - 1316135..1316389 (-) 255 WP_369350416.1 hypothetical protein -
  AB6M99_RS06210 (AB6M99_06210) - 1316389..1316925 (-) 537 WP_369350417.1 DUF1642 domain-containing protein -
  AB6M99_RS06215 (AB6M99_06215) - 1316918..1317232 (-) 315 WP_369351203.1 DUF1372 family protein -
  AB6M99_RS06220 (AB6M99_06220) - 1317321..1317707 (-) 387 WP_369350418.1 hypothetical protein -
  AB6M99_RS06225 (AB6M99_06225) - 1317704..1317859 (-) 156 WP_369350419.1 hypothetical protein -
  AB6M99_RS06230 (AB6M99_06230) - 1317862..1317987 (-) 126 WP_369350420.1 hypothetical protein -
  AB6M99_RS06235 (AB6M99_06235) - 1318367..1319761 (-) 1395 WP_369350421.1 VapE domain-containing protein -
  AB6M99_RS06240 (AB6M99_06240) - 1319745..1320572 (-) 828 WP_369350422.1 bifunctional DNA primase/polymerase -
  AB6M99_RS06245 (AB6M99_06245) ssb 1320584..1320979 (-) 396 WP_369350423.1 single-stranded DNA-binding protein Machinery gene
  AB6M99_RS06250 (AB6M99_06250) - 1320972..1321163 (-) 192 WP_369350424.1 hypothetical protein -
  AB6M99_RS06255 (AB6M99_06255) - 1321167..1321877 (-) 711 WP_369350425.1 ERF family protein -
  AB6M99_RS06260 (AB6M99_06260) - 1322031..1322210 (-) 180 WP_369350426.1 hypothetical protein -
  AB6M99_RS06265 (AB6M99_06265) - 1322223..1323398 (-) 1176 WP_369350427.1 DEAD/DEAH box helicase family protein -
  AB6M99_RS06270 (AB6M99_06270) - 1323367..1323831 (-) 465 WP_369350428.1 hypothetical protein -
  AB6M99_RS06275 (AB6M99_06275) - 1323828..1324310 (-) 483 WP_369350429.1 siphovirus Gp157 family protein -
  AB6M99_RS06280 (AB6M99_06280) - 1324310..1324642 (-) 333 WP_369350430.1 hypothetical protein -
  AB6M99_RS06285 (AB6M99_06285) - 1324669..1324914 (-) 246 WP_369350431.1 hypothetical protein -
  AB6M99_RS06290 (AB6M99_06290) - 1324901..1325074 (-) 174 WP_369350432.1 hypothetical protein -
  AB6M99_RS06295 (AB6M99_06295) - 1325071..1325214 (-) 144 WP_369350433.1 hypothetical protein -
  AB6M99_RS06300 (AB6M99_06300) - 1325375..1325641 (-) 267 WP_369350434.1 helix-turn-helix domain-containing protein -
  AB6M99_RS06305 (AB6M99_06305) - 1325720..1325935 (-) 216 WP_369350435.1 transcriptional regulator -
  AB6M99_RS06310 (AB6M99_06310) - 1325932..1326129 (-) 198 WP_027974611.1 helix-turn-helix transcriptional regulator -
  AB6M99_RS06315 (AB6M99_06315) - 1326320..1326463 (+) 144 WP_169361579.1 hypothetical protein -
  AB6M99_RS06320 (AB6M99_06320) - 1327323..1327685 (+) 363 WP_369350436.1 helix-turn-helix domain-containing protein -
  AB6M99_RS06325 (AB6M99_06325) - 1327709..1328089 (+) 381 WP_369350438.1 ImmA/IrrE family metallo-endopeptidase -
  AB6M99_RS06330 (AB6M99_06330) - 1328093..1328818 (+) 726 WP_369350439.1 hypothetical protein -
  AB6M99_RS06335 (AB6M99_06335) - 1328884..1329432 (+) 549 WP_369350440.1 hypothetical protein -
  AB6M99_RS06340 (AB6M99_06340) - 1329497..1329919 (+) 423 WP_369350441.1 hypothetical protein -
  AB6M99_RS06345 (AB6M99_06345) - 1329923..1330336 (+) 414 WP_369350442.1 hypothetical protein -
  AB6M99_RS06350 (AB6M99_06350) - 1330466..1331584 (+) 1119 WP_369350443.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14655.31 Da        Isoelectric Point: 4.8779

>NTDB_id=1030297 AB6M99_RS06245 WP_369350423.1 1320584..1320979(-) (ssb) [Streptococcus hillyeri strain S23-3001-2]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKNDAGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRNQQGNQEGAFGNSSPADIKDDDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1030297 AB6M99_RS06245 WP_369350423.1 1320584..1320979(-) (ssb) [Streptococcus hillyeri strain S23-3001-2]
ATGATTAACAATGTCGTACTTGTGGGGCGTATGACCCGTGATGCAGAACTTCGTTACACACCCTCAAATGTAGCTGTTGC
TACGTTTACTCTTGCTGTGAACCGCACTTTTAAAAATGATGCCGGGGAGCGTGAAGCAGACTTCATCAACTGTGTGATTT
GGCGGCAGTCAGCAGAGAACTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATTGGCATTACTGGTCGCATTCAAACACGA
AACTATGAGAATCAACAAGGGCAACGTGTCTATGTGACAGAGGTTGTCGCAGAAAGTTTCCAACTCTTGGAAAGTCGTAA
TCAGCAAGGCAACCAAGAAGGTGCGTTTGGAAATAGCAGTCCTGCTGATATTAAGGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.718
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.529

100

0.504
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  ssbB/cilA Streptococcus pneumoniae Rx1

46.617

100

0.473
  ssbB/cilA Streptococcus mitis NCTC 12261

46.617

100

0.473
  ssbB/cilA Streptococcus pneumoniae D39

46.617

100

0.473
  ssbB/cilA Streptococcus pneumoniae R6

46.617

100

0.473
  ssbB/cilA Streptococcus mitis SK321

46.617

100

0.473
  ssbA Streptococcus mutans UA159

44.118

100

0.458
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.128

83.206

0.45
  ssbB Lactococcus lactis subsp. cremoris KW2

47.368

87.023

0.412

Multiple sequence alignment